The DOI matches its Crossref record; 62 of the 62 references it cites were found in a registry or an index.
Genome sequence of the cultivated cotton Gossypium arboreum
Open accessAbstract
Yu-Xian Zhu, Jun Wang, Shuxun Yu and colleagues report sequencing and assembly of the genome of cultivated cotton, Gossypium arboreum. Comparison with the Gossypium raimondii genome sequence provides insights into genome evolution and speciation, and identifies two shared whole-genome duplication events occurring before the speciation event around 2–13 million years ago. The complex allotetraploid nature of the cotton genome (AADD; 2n = 52) makes genetic, genomic and functional analyses extremely challenging. Here we sequenced and assembled the Gossypium arboreum (AA; 2n = 26) genome, a putative contributor of the A subgenome. A total of 193.6 Gb of clean sequence covering the genome by 112.6-fold was obtained by paired-end sequencing. We further anchored and oriented 90.4% of the assembly on 13 pseudochromosomes and found that 68.5% of the genome is occupied by repetitive DNA sequences. We predicted 41,330 protein-coding genes in G. arboreum. Two whole-genome duplications were shared by G. arboreum and Gossypium raimondii before speciation. Insertions of long terminal repeats in the past 5 million years are responsible for the twofold difference in the sizes of these genomes. Comparative transcriptome studies showed the key role of the nucleotide binding site (NBS)-encoding gene family in resistance to Verticillium dahliae and the involvement of ethylene in the development of cotton fiber cells.
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Cited by
Chen, Z. J., Sreedasyam, A., Ando, A., Song, Q., De Santiago, L. M., Hulse-Kemp, A. M., Ding, M., Ye, W., Kirkbride, R. C., Jenkins, J., et al. (2020) · Nature Genetics · doi:10.1038/s41588-020-0614-5 · Cited by 462
Self-citationMammadov, J., Buyyarapu, R., Guttikonda, S. K., Parliament, K., Abdurakhmonov, I. Y., & Kumpatla, S. P. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00886 · Cited by 298
A call for benchmarking transposable element annotation methods
Hoen, D. R., Hickey, G., Bourque, G., Casacuberta, J., Cordaux, R., Feschotte, C., Fiston-Lavier, A.-S., Hua-Van, A., Hubley, R., Kapusta, A., et al. (2015) · Mobile DNA · doi:10.1186/s13100-015-0044-6 · Cited by 105
Kim, Y.-M., Kim, S., Koo, N., Shin, A.-Y., Yeom, S.-I., Seo, E., Park, S.-J., Kang, W.-H., Kim, M.-S., Park, J., et al. (2016) · DNA Research · doi:10.1093/dnares/dsw049 · Cited by 21
Metadata
- Authors
- Li, F., Fan, G., Wang, K., Sun, F., Yuan, Y., Song, G., Li, Q., Ma, Z., Lu, C., Zou, C., Chen, W., Liang, X., Shang, H., Liu, W., Shi, C., Xiao, G., Gou, C., Ye, W., Xu, X., Zhang, X., Wei, H., Li, Z., Zhang, G., Wang, J., Liu, K., Kohel, R. J., Percy, R. G., Yu, J. Z., Zhu, Y.-X., Wang, J., & Yu, S.
- Venue
- Nature Genetics
- Published
- 2014-05-18
- Volume
- 46
- Issue
- 6
- Pages
- 567-572
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2144430955
- Cited by
- 870
- References
- 62
- FWCI
- 107.04
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Li, F., Fan, G., Wang, K., Sun, F., Yuan, Y., Song, G., Li, Q., Ma, Z., Lu, C., Zou, C., Chen, W., Liang, X., Shang, H., Liu, W., Shi, C., Xiao, G., Gou, C., Ye, W., Xu, X., . . . Yu, S. (2014). Genome sequence of the cultivated cotton Gossypium arboreum. Nature Genetics. https://doi.org/10.1038/ng.2987
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