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IMG/M: a data management and analysis system for metagenomes
Open accessAbstract
IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG's comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m.
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Cites
An obesity-associated gut microbiome with increased capacity for energy harvest
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., & Gordon, J. I. (2006) · Nature · doi:10.1038/nature05414 · Cited by 12,444
Community structure and metabolism through reconstruction of microbial genomes from the environment
Tyson, G. W., Chapman, J., Hugenholtz, P., Allen, E. E., Ram, R. J., Richardson, P. M., Solovyev, V. V., Rubin, E. M., Rokhsar, D. S., & Banfield, J. F. (2004) · Nature · doi:10.1038/nature02340 · Cited by 2,417
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Cited by
BBMerge – Accurate paired shotgun read merging via overlap
Bushnell, B., Rood, J., & Singer, E. (2017) · PLOS ONE · doi:10.1371/journal.pone.0185056 · Cited by 1,544
Manipulating the soil microbiome to increase soil health and plant fertility
Chaparro, J. M., Sheflin, A. M., Manter, D. K., & Vivanco, J. M. (2012) · Biology and Fertility of Soils · doi:10.1007/s00374-012-0691-4 · Cited by 1,099
Characterization of the gut microbiome using 16S or shotgun metagenomics
Jovel, J., Patterson, J., Wang, W., Hotte, N., O'Keefe, S., Mitchel, T., Perry, T., Kao, D., Mason, A. L., Madsen, K. L., et al. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00459 · Cited by 942
Experimental and analytical tools for studying the human microbiome
Kuczynski, J., Lauber, C. L., Walters, W. A., Parfrey, L. W., Clemente, J. C., Gevers, D., & Knight, R. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3129 · Cited by 709
Wooley, J. C., Godzik, A., & Friedberg, I. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000667 · Cited by 688
Metadata
- Authors
- Markowitz, V. M., Ivanova, N. N., Szeto, E., Palaniappan, K., Chu, K., Dalevi, D., Chen, I.-M. A., Grechkin, Y., Dubchak, I., Anderson, I., Lykidis, A., Mavromatis, K., Hugenholtz, P., & Kyrpides, N. C.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-12-23
- Volume
- 36
- Issue
- Database
- Pages
- D534-D538
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2156296225
- Cited by
- 381
- References
- 2
- FWCI
- 9.46
- Type
- journal article
- Language
- en
- Open access
- gold
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- Markowitz, V. M., Ivanova, N. N., Szeto, E., Palaniappan, K., Chu, K., Dalevi, D., Chen, I.-M. A., Grechkin, Y., Dubchak, I., Anderson, I., Lykidis, A., Mavromatis, K., Hugenholtz, P., & Kyrpides, N. C. (2007). IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Research. https://doi.org/10.1093/nar/gkm869
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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