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AAindex: amino acid index database, progress report 2008
Open accessAbstract
AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. We have added a collection of protein contact potentials to the AAindex as a new section. Accordingly AAindex consists of three sections now: AAindex1 for the amino acid index of 20 numerical values, AAindex2 for the amino acid substitution matrix and AAindex3 for the statistical protein contact potentials. All data are derived from published literature. The database can be accessed through the DBGET/LinkDB system at GenomeNet (http://www.genome.jp/dbget-bin/www_bfind?aaindex) or downloaded by anonymous FTP (ftp://ftp.genome.jp/pub/db/community/aaindex/).
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Cited by
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Yang, K. K., Wu, Z., & Arnold, F. H. (2019) · Nature Methods · doi:10.1038/s41592-019-0496-6 · Cited by 1,130
Liu, B., Liu, F., Wang, X., Chen, J., Fang, L., & Chou, K.-C. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv458 · Cited by 721
Xiao, N., Cao, D.-S., Zhu, M.-F., & Xu, Q.-S. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv042 · Cited by 334
Liu, B. (2019) · Briefings in Bioinformatics · doi:10.1093/bib/bbx165 · Cited by 322
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Metadata
- Authors
- Kawashima, S., Pokarowski, P., Pokarowska, M., Kolinski, A., Katayama, T., & Kanehisa, M.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2007-12-23
- Volume
- 36
- Issue
- Database
- Pages
- D202-D205
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2043338013
- Cited by
- 1,129
- References
- 0
- FWCI
- 6.70
- Type
- journal article
- Language
- en
- Open access
- gold
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- Kawashima, S., Pokarowski, P., Pokarowska, M., Kolinski, A., Katayama, T., & Kanehisa, M. (2007). AAindex: amino acid index database, progress report 2008. Nucleic Acids Research. https://doi.org/10.1093/nar/gkm998
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