The DOI matches its Crossref record; 23 of the 23 references it cites were found in a registry or an index.
The Vienna RNA Websuite
Open accessAbstract
The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA-RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/.
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Cites
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Mathews, D. H., Sabina, J., Zuker, M., & Turner, D. H. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2700 · Cited by 3,795
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
Zuker, M., & Stiegler, P. (1981) · Nucleic Acids Research · doi:10.1093/nar/9.1.133 · Cited by 3,562
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
SantaLucia, J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.4.1460 · Cited by 2,793
Vienna RNA secondary structure server
Hofacker, I. L. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg599 · Cited by 2,345
Self-citationFast folding and comparison of RNA secondary structures
Hofacker, I. L., Fontana, W., Stadler, P. F., Bonhoeffer, L. S., Tacker, M., & Schuster, P. (1994) · Monatshefte f�r Chemie Chemical Monthly · doi:10.1007/bf00818163 · Cited by 2,306
Self-citationThe Bioperl Toolkit: Perl Modules for the Life Sciences
Stajich, J. E., Block, D., Boulez, K., Brenner, S. E., Chervitz, S. A., Dagdigian, C., Fuellen, G., Gilbert, J. G. R., Korf, I., Lapp, H., et al. (2002) · Genome Research · doi:10.1101/gr.361602 · Cited by 1,654
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
McCaskill, J. S. (1990) · Biopolymers · doi:10.1002/bip.360290621 · Cited by 1,310
Secondary Structure Prediction for Aligned RNA Sequences
Hofacker, I. L., Fekete, M., & Stadler, P. F. (2002) · Journal of Molecular Biology · doi:10.1016/s0022-2836(02)00308-x · Cited by 639
Self-citationSimultaneous Solution of the RNA Folding, Alignment and Protosequence Problems
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Cited by
Lorenz, R., Bernhart, S. H., Höner zu Siederdissen, C., Tafer, H., Flamm, C., Stadler, P. F., & Hofacker, I. L. (2011) · Algorithms for Molecular Biology · doi:10.1186/1748-7188-6-26 · Cited by 5,098
Self-citationA large-scale binding and functional map of human RNA-binding proteins
Van Nostrand, E. L., Freese, P., Pratt, G. A., Wang, X., Wei, X., Xiao, R., Blue, S. M., Chen, J.-Y., Cody, N. A. L., Dominguez, D., et al. (2020) · Nature · doi:10.1038/s41586-020-2077-3 · Cited by 1,317
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
Fonfara, I., Richter, H., Bratovič, M., Le Rhun, A., & Charpentier, E. (2016) · Nature · doi:10.1038/nature17945 · Cited by 988
RBPDB: a database of RNA-binding specificities
Cook, K. B., Kazan, H., Zuberi, K., Morris, Q., & Hughes, T. R. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1069 · Cited by 638
Sequence modeling and design from molecular to genome scale with Evo
Nguyen, E., Poli, M., Durrant, M. G., Kang, B., Katrekar, D., Li, D. B., Bartie, L. J., Thomas, A. W., King, S. H., Brixi, G., et al. (2024) · Science · doi:10.1126/science.ado9336 · Cited by 580
Metadata
- Authors
- Gruber, A. R., Lorenz, R., Bernhart, S. H., Neubock, R., & Hofacker, I. L.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-05-19
- Volume
- 36
- Issue
- Web Server
- Pages
- W70-W74
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2154241726
- Cited by
- 2,688
- References
- 23
- FWCI
- 24.32
- Type
- journal article
- Language
- en
- Open access
- gold
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- Gruber, A. R., Lorenz, R., Bernhart, S. H., Neubock, R., & Hofacker, I. L. (2008). The Vienna RNA Websuite. Nucleic Acids Research. https://doi.org/10.1093/nar/gkn188
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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