Thermodynamic analysis of 5' and 3' single- and 3' double-nucleotide overhangs neighboring wobble terminal base pairs
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Nucleotide compositions of the overhangs have been reported to affect TS of miRNA duplexes in vitro.
“Nucleotide compositions of the overhangs have been reported to affect TS of miRNA duplexes in vitro (Miller, Jones, Giovannitti, Piper, & Serra, 2008; O'Toole, Miller, Haines, Zink, & Serra, 2006), therefore altered nucleotide compositions of the overhangs may potentially alter strand selection.”
From microRNA strand selection: Unwinding the rules (2021) · cites this paper as Miller, Jones, Giovannitti, Piper, & Serra, 2008
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Cites
Thermodynamics and NMR of Internal G·T Mismatches in DNA
Allawi, H. T., & SantaLucia, J. (1997) · Biochemistry · doi:10.1021/bi962590c · Cited by 623 · cited 1× · see citing works
“Data from both models agreed within 15% for all sequences, consistent with the two-state model (17,39,40), with the exception of (UGGCCGAG)2, (UGGCCGAU)2 and (GGCGCUUU)2.”
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- Authors
- Miller, S., Jones, L. E., Giovannitti, K., Piper, D., & Serra, M. J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2008-08-21
- Volume
- 36
- Issue
- 17
- Pages
- 5652-5659
- ISSN
- 0305-1048
- 1362-4962
- PMC
- PMC2553593
- Cited by
- 15
- References
- 1
- Language
- en
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