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GenBank

Open access
Benson, Dennis A., Karsch-Mizrachi, Ilene, Lipman, David J., Ostell, James, Sayers, Eric W.·2010·Nucleic Acids Research

Abstract

GenBank is a comprehensive database that contains publicly available nucleotide sequences for more than 300,000 organisms named at the genus level or lower, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the European Molecular Biology Laboratory Nucleotide Sequence Database in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bi-monthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI homepage: www.ncbi.nlm.nih.gov.

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Metadata

Authors
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W.
Venue
Nucleic Acids Research
Published
2009-11-12
Volume
38
Issue
suppl_1
Pages
D46-D51
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W4249435950
Cited by
345
References
0
FWCI
18.24
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: GenBank. https://app.cochat.ai/papers/10.1093/nar/gkp1024
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Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W. (2010). GenBank. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp1024

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