The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
The Sequence Read Archive
Open accessAbstract
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data archive, the Sequence Read Archive (SRA). The preservation of experimental data is an important part of the scientific record, and increasing numbers of journals and funding agencies require that next-generation sequence data are deposited into the SRA. The SRA was established as a public repository for the next-generation sequence data and is operated by the International Nucleotide Sequence Database Collaboration (INSDC). INSDC partners include the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI) and the DNA Data Bank of Japan (DDBJ). The SRA is accessible at http://www.ncbi.nlm.nih.gov/Traces/sra from NCBI, at http://www.ebi.ac.uk/ena from EBI and at http://trace.ddbj.nig.ac.jp from DDBJ. In this article, we present the content and structure of the SRA, detail our support for sequencing platforms and provide recommended data submission levels and formats. We also briefly outline our response to the challenge of data growth.
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Citations
Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Cock, P. J. A., Fields, C. J., Goto, N., Heuer, M. L., & Rice, P. M. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp1137 · Cited by 1,879
The International Nucleotide Sequence Database Collaboration
Karsch-Mizrachi, I., Nakamura, Y., Cochrane, G., & on behalf of the International Nucleotide Sequence Database Collaboration (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1006 · Cited by 716
Self-citationBenson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp1024 · Cited by 345
Human genomes as email attachments
Christley, S., Lu, Y., Li, C., & Xie, X. S. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn582 · Cited by 169
Archiving next generation sequencing data
Shumway, M. F., Cochrane, G., & Sugawara, H. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp1078 · Cited by 122
Self-citationThe International Nucleotide Sequence Database Collaboration
Cochrane, G., Karsch‐Mizrachi, I., & Nakamura, Y. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq1150 · Cited by 113
DDBJ launches a new archive database with analytical tools for next-generation sequence data
Kaminuma, E., Mashima, J., Kodama, Y., Gojobori, T., Ogasawara, O., Okubo, K., Takagi, T., & Nakamura, Y. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp847 · Cited by 99
Improvements to services at the European Nucleotide Archive
Leinonen, R., Akhtar, R. A., Birney, E., Bonfield, J., Bower, L., Corbett, M., Cheng, Y., Demiralp, F., Faruque, N., Goodgame, N., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp998 · Cited by 70
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Research works printed but not linked: 2
- 2009, Nucleic Acids Research, 38, 1767
- 2001, Bioinformatics, 18, 3
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A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Parks, D. H., Chuvochina, M., Waite, D. W., Rinke, C., Skarshewski, A., Chaumeil, P.-A., & Hugenholtz, P. (2018) · Nature Biotechnology · doi:10.1038/nbt.4229 · Cited by 3,603
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Parks, D. H., Rinke, C., Chuvochina, M., Chaumeil, P.-A., Woodcroft, B. J., Evans, P. N., Hugenholtz, P., & Tyson, G. W. (2017) · Nature Microbiology · doi:10.1038/s41564-017-0012-7 · Cited by 1,882
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Metadata
- Authors
- Leinonen, R., Sugawara, H., Shumway, M., & on behalf of the International Nucleotide Sequence Database Collaboration
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-11-09
- Volume
- 39
- Issue
- Database
- Pages
- D19-D21
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2116041602
- Cited by
- 2,746
- References
- 9
- FWCI
- 81.32
- Type
- journal article
- Language
- en
- Open access
- gold
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- Leinonen, R., Sugawara, H., Shumway, M., & on behalf of the International Nucleotide Sequence Database Collaboration. (2011). The Sequence Read Archive. Nucleic Acids Research. https://doi.org/10.1093/nar/gkq1019
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