The DOI matches its Crossref record; 43 of the 43 references it cites were found in a registry or an index.
PlnTFDB: updated content and new features of the plant transcription factor database
Open accessAbstract
The Plant Transcription Factor Database (PlnTFDB; http://plntfdb.bio.uni-potsdam.de/v3.0/) is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species (sensu lato) whose genomes have been completely sequenced and annotated. The complete sets of 84 families of TFs and TRs from 19 species ranging from unicellular red and green algae to angiosperms are included in PlnTFDB, representing >1.6 billion years of evolution of gene regulatory networks. For each gene family, a basic description is provided that is complemented by literature references, and multiple sequence alignments of protein domains. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online. Moreover, the different species in PlnTFDB are linked to each other by means of orthologous genes facilitating cross-species comparisons.
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Cites
The Pfam Protein Families Database
Bateman, A. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.276 · Cited by 14,000
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
The French–Italian Public Consortium for Grapevine Genome Characterization (2007) · Nature · doi:10.1038/nature06148 · Cited by 3,767
The Sorghum bicolor genome and the diversification of grasses
Paterson, A. H., Bowers, J. E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T., Poliakov, A., et al. (2009) · Nature · doi:10.1038/nature07723 · Cited by 3,096
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
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Self-citationThe Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants
Rensing, S. A., Lang, D., Zimmer, A. D., Terry, A., Salamov, A., Shapiro, H., Nishiyama, T., Perroud, P.-F., Lindquist, E. A., Kamisugi, Y., et al. (2008) · Science · doi:10.1126/science.1150646 · Cited by 1,852
Self-citationThe Pfam protein families database
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Comprehensive Analysis of NAC Family Genes in Oryza sativa and Arabidopsis thaliana
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Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
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Cited by
Miller, R., Wu, G., Deshpande, R. R., Vieler, A., Gärtner, K., Li, X., Moellering, E. R., Zäuner, S., Cornish, A. J., Liu, B., et al. (2010) · PLANT PHYSIOLOGY · doi:10.1104/pp.110.165159 · Cited by 511
Kim, Y.-M., Kim, S., Koo, N., Shin, A.-Y., Yeom, S.-I., Seo, E., Park, S.-J., Kang, W.-H., Kim, M.-S., Park, J., et al. (2016) · DNA Research · doi:10.1093/dnares/dsw049 · Cited by 21
Metadata
- Authors
- Pérez-Rodríguez, P., Riaño-Pachón, D. M., Corrêa, L. G. G., Rensing, S. A., Kersten, B., & Mueller-Roeber, B.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-10-24
- Volume
- 38
- Issue
- suppl_1
- Pages
- D822-D827
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2161511344
- Cited by
- 734
- References
- 43
- FWCI
- 30.23
- Type
- journal article
- Language
- en
- Open access
- gold
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- Pérez-Rodríguez, P., Riaño-Pachón, D. M., Corrêa, L. G. G., Rensing, S. A., Kersten, B., & Mueller-Roeber, B. (2010). PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp805
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