The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
PDBe: Protein Data Bank in Europe
Open accessAbstract
The Protein Data Bank in Europe (PDBe) (http://www.ebi.ac.uk/pdbe/) is actively working with its Worldwide Protein Data Bank partners to enhance the quality and consistency of the international archive of bio-macromolecular structure data, the Protein Data Bank (PDB). PDBe also works closely with its collaborators at the European Bioinformatics Institute and the scientific community around the world to enhance its databases and services by adding curated and actively maintained derived data to the existing structural data in the PDB. We have developed a new database infrastructure based on the remediated PDB archive data and a specially designed database for storing information on interactions between proteins and bound molecules. The group has developed new services that allow users to carry out simple textual queries or more complex 3D structure-based queries. The newly designed 'PDBeView Atlas pages' provide an overview of an individual PDB entry in a user-friendly layout and serve as a starting point to further explore the information available in the PDBe database. PDBe's active involvement with the X-ray crystallography, Nuclear Magnetic Resonance spectroscopy and cryo-Electron Microscopy communities have resulted in improved tools for structure deposition and analysis.
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Cites
ChEMBL: a large-scale bioactivity database for drug discovery
Gaulton, A., Bellis, L. J., Bento, A. P., Chambers, J., Davies, M., Hersey, A., Light, Y., McGlinchey, S., Michalovich, D., Al-Lazikani, B., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr777 · Cited by 4,382
Announcing the worldwide Protein Data Bank
Berman, H., Henrick, K., & Nakamura, H. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb1203-980 · Cited by 3,093
Self-citationFederhen, S. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1178 · Cited by 1,436
Cited by
The FAIR Guiding Principles for scientific data management and stewardship
Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. B., Bourne, P. E., et al. (2016) · Scientific Data · doi:10.1038/sdata.2016.18 · Cited by 18,423
Pfam: the protein families database
Finn, R. D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Heger, A., Hetherington, K., Holm, L., Mistry, J., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1223 · Cited by 6,148
ChEMBL: a large-scale bioactivity database for drug discovery
Gaulton, A., Bellis, L. J., Bento, A. P., Chambers, J., Davies, M., Hersey, A., Light, Y., McGlinchey, S., Michalovich, D., Al-Lazikani, B., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr777 · Cited by 4,382
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive
Burley, S. K., Berman, H. M., Kleywegt, G. J., Markley, J. L., Nakamura, H., & Velankar, S. (2017) · Methods in Molecular Biology · doi:10.1007/978-1-4939-7000-1_26 · Cited by 1,141
Self-citationA Highly Conserved Program of Neuronal Microexons Is Misregulated in Autistic Brains
Irimia, M., Weatheritt, R. J., Ellis, J. D., Parikshak, N. N., Gonatopoulos-Pournatzis, T., Babor, M., Quesnel-Vallières, M., Tapial, J., Raj, B., O’Hanlon, D., et al. (2014) · Cell · doi:10.1016/j.cell.2014.11.035 · Cited by 693
Metadata
- Authors
- Velankar, S., Best, C., Beuth, B., Boutselakis, C. H., Cobley, N., Sousa Da Silva, A. W., Dimitropoulos, D., Golovin, A., Hirshberg, M., John, M., Krissinel, E. B., Newman, R., Oldfield, T., Pajon, A., Penkett, C. J., Pineda-Castillo, J., Sahni, G., Sen, S., Slowley, R., Suarez-Uruena, A., Swaminathan, J., van Ginkel, G., Vranken, W. F., Henrick, K., & Kleywegt, G. J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-10-25
- Volume
- 38
- Issue
- Database
- Pages
- D308-D317
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2171681733
- Cited by
- 329
- References
- 3
- FWCI
- 11.33
- Type
- journal article
- Language
- en
- Open access
- gold
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- The paper
- Velankar, S., Best, C., Beuth, B., Boutselakis, C. H., Cobley, N., Sousa Da Silva, A. W., Dimitropoulos, D., Golovin, A., Hirshberg, M., John, M., Krissinel, E. B., Newman, R., Oldfield, T., Pajon, A., Penkett, C. J., Pineda-Castillo, J., Sahni, G., Sen, S., Slowley, R., . . . Kleywegt, G. J. (2010). PDBe: Protein Data Bank in Europe. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp916
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
