The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
ENCODE whole-genome data in the UCSC Genome Browser
Open accessAbstract
The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing a comprehensive catalog of functional elements. The ENCODE Data Coordination Center at The University of California, Santa Cruz (UCSC) is the primary repository for experimental results generated by ENCODE investigators. These results are captured in the UCSC Genome Bioinformatics database and download server for visualization and data mining via the UCSC Genome Browser and companion tools (Rhead et al. The UCSC Genome Browser Database: update 2010, in this issue). The ENCODE web portal at UCSC (http://encodeproject.org or http://genome.ucsc.edu/ENCODE) provides information about the ENCODE data and convenient links for access.
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Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
The ENCODE Project Consortium (2007) · Nature · doi:10.1038/nature05874 · Cited by 5,223
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Kircher, M., Witten, D. M., Jain, P., O'Roak, B. J., Cooper, G. M., & Shendure, J. (2014) · Nature Genetics · doi:10.1038/ng.2892 · Cited by 6,183
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Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., et al. (2012) · Genome Research · doi:10.1101/gr.136184.111 · Cited by 2,033
The Encyclopedia of DNA elements (ENCODE): data portal update
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Self-citationCharacterization of the CLEAR network reveals an integrated control of cellular clearance pathways
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Metadata
- Authors
- Rosenbloom, K. R., Dreszer, T. R., Pheasant, M., Barber, G. P., Meyer, L. R., Pohl, A., Raney, B. J., Wang, T., Hinrichs, A. S., Zweig, A. S., Fujita, P. A., Learned, K., Rhead, B., Smith, K. E., Kuhn, R. M., Karolchik, D., Haussler, D., & Kent, W. J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-11-17
- Volume
- 38
- Issue
- Database
- Pages
- D620-D625
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2160379721
- Cited by
- 353
- References
- 2
- FWCI
- 17.88
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: ENCODE whole-genome data in the UCSC Genome Browser. https://app.cochat.ai/papers/10.1093/nar/gkp961
- The paper
- Rosenbloom, K. R., Dreszer, T. R., Pheasant, M., Barber, G. P., Meyer, L. R., Pohl, A., Raney, B. J., Wang, T., Hinrichs, A. S., Zweig, A. S., Fujita, P. A., Learned, K., Rhead, B., Smith, K. E., Kuhn, R. M., Karolchik, D., Haussler, D., & Kent, W. J. (2010). ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Research. https://doi.org/10.1093/nar/gkp961
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
