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ENCODE whole-genome data in the UCSC Genome Browser
Open accessAbstract
The Encyclopedia of DNA Elements (ENCODE) project is an international consortium of investigators funded to analyze the human genome with the goal of producing a comprehensive catalog of functional elements. The ENCODE Data Coordination Center at The University of California, Santa Cruz (UCSC) is the primary repository for experimental results generated by ENCODE investigators. These results are captured in the UCSC Genome Bioinformatics database and download server for visualization and data mining via the UCSC Genome Browser and companion tools (Rhead et al. The UCSC Genome Browser Database: update 2010, in this issue). The ENCODE web portal at UCSC (http://encodeproject.org or http://genome.ucsc.edu/ENCODE) provides information about the ENCODE data and convenient links for access.
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Cites
The Sequence Alignment/Map format and SAMtools
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The ENCODE Project Consortium (2007) · Nature · doi:10.1038/nature05874 · Cited by 5,223
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Metadata
- Authors
- Rosenbloom, K. R., Dreszer, T. R., Pheasant, M., Barber, G. P., Meyer, L. R., Pohl, A., Raney, B. J., Wang, T., Hinrichs, A. S., Zweig, A. S., Fujita, P. A., Learned, K., Rhead, B., Smith, K. E., Kuhn, R. M., Karolchik, D., Haussler, D., & Kent, W. J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-11-17
- Volume
- 38
- Issue
- Database
- Pages
- D620-D625
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2160379721
- Cited by
- 353
- References
- 2
- FWCI
- 17.88
- Type
- journal article
- Language
- en
- Open access
- gold
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
