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AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
Open accessAbstract
The Arabidopsis Gene Regulatory Information Server (AGRIS; http://arabidopsis.med.ohio-state.edu/) provides a comprehensive resource for gene regulatory studies in the model plant Arabidopsis thaliana. Three interlinked databases, AtTFDB, AtcisDB and AtRegNet, furnish comprehensive and updated information on transcription factors (TFs), predicted and experimentally verified cis-regulatory elements (CREs) and their interactions, respectively. In addition to significant contributions in the identification of the entire set of TF-DNA interactions, which are the key to understand the gene regulatory networks that govern Arabidopsis gene expression, tools recently incorporated into AGRIS include the complete set of words length 5-15 present in the Arabidopsis genome and the integration of AtRegNet with visualization tools, such as the recently developed ReIN application. All the information in AGRIS is publicly available and downloadable upon registration.
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Cited by
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
Jin, J., Tian, F., Yang, D.-C., Meng, Y.-Q., Kong, L., Luo, J., & Gao, G. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw982 · Cited by 2,361
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
Jin, J., Zhang, H., Kong, L., Gao, G., & Luo, J. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1016 · Cited by 963
Liu, Z., Xin, M., Qin, J., Peng, H., Ni, Z., Yao, Y., & Sun, Q. (2015) · BMC Plant Biology · doi:10.1186/s12870-015-0511-8 · Cited by 383
Chow, C.-N., Zheng, H.-Q., Wu, N.-Y., Chien, C.-H., Huang, H.-D., Lee, T.-Y., Chiang-Hsieh, Y.-F., Hou, P.-F., Yang, T.-Y., & Chang, W.-C. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1035 · Cited by 366
Li, C.-F., Zhu, Y., Yu, Y., Zhao, Q.-Y., Wang, S.-J., Wang, X.-C., Yao, M.-Z., Luo, D., Li, X., Chen, L., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1773-0 · Cited by 180
Metadata
- Authors
- Yilmaz, A., Mejia-Guerra, M. K., Kurz, K., Liang, X., Welch, L., & Grotewold, E.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-11-08
- Volume
- 39
- Issue
- Database
- Pages
- D1118-D1122
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2045299822
- Cited by
- 328
- References
- 0
- FWCI
- 25.10
- Type
- journal article
- Language
- en
- Open access
- gold
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- Yilmaz, A., Mejia-Guerra, M. K., Kurz, K., Liang, X., Welch, L., & Grotewold, E. (2011). AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. Nucleic Acids Research. https://doi.org/10.1093/nar/gkq1120
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