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Cited by 584

The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.

lncRNAdb: a reference database for long noncoding RNAs

Open access
Amaral, Paulo P., Clark, Michael B., Gascoigne, Dennis K., Dinger, Marcel E., Mattick, John S.·2011·Nucleic Acids Research

Abstract

Large numbers of long RNAs with little or no protein-coding potential [long noncoding RNAs (lncRNAs)] are being identified in eukaryotes. In parallel, increasing data describing the expression profiles, molecular features and functions of individual lncRNAs in a variety of systems are accumulating. To enable the systematic compilation and updating of this information, we have developed a database (lncRNAdb) containing a comprehensive list of lncRNAs that have been shown to have, or to be associated with, biological functions in eukaryotes, as well as messenger RNAs that have regulatory roles. Each entry contains referenced information about the RNA, including sequences, structural information, genomic context, expression, subcellular localization, conservation, functional evidence and other relevant information. lncRNAdb can be searched by querying published RNA names and aliases, sequences, species and associated protein-coding genes, as well as terms contained in the annotations, such as the tissues in which the transcripts are expressed and associated diseases. In addition, lncRNAdb is linked to the UCSC Genome Browser for visualization and Noncoding RNA Expression Database (NRED) for expression information from a variety of sources. lncRNAdb provides a platform for the ongoing collation of the literature pertaining to lncRNAs and their association with other genomic elements. lncRNAdb can be accessed at: http://www.lncrnadb.org/.

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Metadata

Authors
Amaral, P. P., Clark, M. B., Gascoigne, D. K., Dinger, M. E., & Mattick, J. S.
Venue
Nucleic Acids Research
Published
2010-11-25
Volume
39
Issue
suppl_1
Pages
D146-D151
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2109100311
Cited by
584
References
6
FWCI
11.83
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: lncRNAdb: a reference database for long noncoding RNAs. https://app.cochat.ai/papers/10.1093/nar/gkq1138
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Amaral, P. P., Clark, M. B., Gascoigne, D. K., Dinger, M. E., & Mattick, J. S. (2011). lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research. https://doi.org/10.1093/nar/gkq1138

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