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Issues in bioinformatics benchmarking: the case study of multiple sequence alignment

Aniba, M. R., Poch, O., Thompson, J. D.·2010·Nucleic Acids Research

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Research works printed but not linked: 68

  1. Klipcan, 2008, Trends in genetics : TIG, 24, 142, 10.1016/j.tig.2007.12.006 · DOI
  2. 1996, COMMUN. ACM, 39, 105
  3. 1998, IEEE COMPUTER, 31, 32
  4. McClure, 1994, Molecular Biology and Evolution, 11, 571
  5. PEARSON, 1995, Protein Science, 4, 1145, 10.1002/pro.5560040613 · DOI
  6. Burset, 1996, Genomics, 34, 353, 10.1006/geno.1996.0298 · DOI
  7. Thompson, 1999, Bioinformatics, 15, 87, 10.1093/bioinformatics/15.1.87 · DOI
  8. Gardner, 2005, Nucleic Acids Research, 33, 2433, 10.1093/nar/gki541 · DOI
  9. Wilm, 2006, 1, 19, 10.1186/1748-7188-1-19 · DOI
  10. 2007, Bioinformatics, 23, 2648, 10.1093/bioinformatics/btm389 · DOI
  11. Pollard, 2004, BMC bioinformatics [electronic resource], 5, 6, 10.1186/1471-2105-5-6 · DOI
  12. Kim, 2010, BMC bioinformatics [electronic resource], 11, 54, 10.1186/1471-2105-11-54 · DOI
  13. 2009, Proteins, 9, 217
  14. Kolodny, 2005, Journal of molecular biology, 346, 1173, 10.1016/j.jmb.2004.12.032 · DOI
  15. 2009, Nucleic Acids Research, 37, D310, 10.1093/nar/gkn877 · DOI
  16. Chen, 2003, Proteins, 52, 88, 10.1002/prot.10390 · DOI
  17. 2007, Nucleic Acids Research, 35, D232, 10.1093/nar/gkl812 · DOI
  18. 2009, Bioinformatics, 25, 2404, 10.1093/bioinformatics/btp397 · DOI
  19. Cope, 2004, Bioinformatics, 20, 323, 10.1093/bioinformatics/btg410 · DOI
  20. Choe, 2005, Genome biology, 6, R16, 10.1186/gb-2005-6-2-r16 · DOI
  21. 2009, BMC BINFORMATICS, 10, 319, 10.1186/1471-2105-10-319 · DOI
  22. Drelie Gelasca, 2009, BMC bioinformatics [electronic resource], 10, 368, 10.1186/1471-2105-10-368 · DOI
  23. 2006, CURRENT BIOINFORMATICS, 1, 95, 10.2174/157489306775330552 · DOI
  24. MIZUGUCHI, 1998, Protein Science, 7, 2469, 10.1002/pro.5560071126 · DOI
  25. 2008, Nucleic Acids Research, 36, D419, 10.1093/nar/gkm993 · DOI
  26. Bahr, 2001, Nucleic Acids Research, 29, 323, 10.1093/nar/29.1.323 · DOI
  27. Thompson, 2005, Proteins, 61, 127, 10.1002/prot.20527 · DOI
  28. Perrodou, 2008, BMC bioinformatics [electronic resource], 9, 213, 10.1186/1471-2105-9-213 · DOI
  29. Raghava, 2003, BMC bioinformatics [electronic resource], 4, 47, 10.1186/1471-2105-4-47 · DOI
  30. Edgar, 2004, Nucleic Acids Research, 32, 1792, 10.1093/nar/gkh340 · DOI · Paper page
  31. 2005, Bioinformatics, 21, 1267, 10.1093/bioinformatics/bth493 · DOI
  32. Subramanian, 2005, BMC bioinformatics [electronic resource], 6, 66, 10.1186/1471-2105-6-66 · DOI
  33. Blackshields, 2006, In silico biology, 6, 321, 10.3233/ISB-00245 · DOI
  34. 2010, Nucleic Acids Research, 38, 2145, 10.1093/nar/gkp1196 · DOI
  35. Stoye, 1998, Bioinformatics, 14, 157, 10.1093/bioinformatics/14.2.157 · DOI
  36. 2009, Nucleic Acids Research, 37, 1011, 10.1093/nar/gkp089 · DOI
  37. Shakhnovich, 2004, Journal of molecular biology, 337, 933, 10.1016/j.jmb.2004.02.009 · DOI
  38. Goldstein, 2008, Current opinion in structural biology, 18, 170, 10.1016/j.sbi.2008.01.006 · DOI
  39. Petrey, 2009, Current opinion in structural biology, 19, 363, 10.1016/j.sbi.2009.02.001 · DOI
  40. Valas, 2009, Current opinion in structural biology, 19, 329, 10.1016/j.sbi.2009.03.011 · DOI
  41. Meier, 2007, Current biology : CB, 17, 173, 10.1016/j.cub.2006.10.063 · DOI
  42. 2008, PNAS, 105, 5057, 10.1073/pnas.0709518105 · DOI
  43. Brenner, 1997, Current opinion in structural biology, 7, 369, 10.1016/S0959-440X(97)80054-1 · DOI
  44. 1999, Nucleic Acids Research, 27, 2682, 10.1093/nar/27.13.2682 · DOI
  45. Baldi, 2000, Bioinformatics, 16, 412, 10.1093/bioinformatics/16.5.412 · DOI · Paper page
  46. du Prel, 2009, 106, 335
  47. Barton, 1987, Journal of molecular biology, 198, 327, 10.1016/0022-2836(87)90316-0 · DOI
  48. Taylor, 1988, Journal of Molecular Evolution, 28, 161, 10.1007/BF02143508 · DOI
  49. 1988, 73, 237
  50. 1996, Nucleic Acids Research, 24, 1515, 10.1093/nar/24.8.1515 · DOI
  51. Gotoh, 1996, Journal of molecular biology, 264, 823, 10.1006/jmbi.1996.0679 · DOI
  52. Thompson, 2000, Nucleic Acids Research, 28, 2919, 10.1093/nar/28.15.2919 · DOI
  53. Notredame, 2000, Journal of molecular biology, 302, 205, 10.1006/jmbi.2000.4042 · DOI
  54. Katoh, 2002, Nucleic Acids Research, 30, 3059, 10.1093/nar/gkf436 · DOI · Paper page
  55. Do, 2005, Genome Research, 15, 330, 10.1101/gr.2821705 · DOI
  56. 2007, Bioinformatics, 23, 802, 10.1093/bioinformatics/btm017 · DOI
  57. O'Sullivan, 2004, Journal of molecular biology, 340, 385, 10.1016/j.jmb.2004.04.058 · DOI
  58. 2006, Nucleic Acids Research, 34, 4364, 10.1093/nar/gkl514 · DOI
  59. Chakrabarti, 2006, Nucleic Acids Research, 34, 2598, 10.1093/nar/gkl274 · DOI
  60. 2005, PNAS, 102, 10557, 10.1073/pnas.0409137102 · DOI
  61. Lee, 2002, Bioinformatics, 18, 452, 10.1093/bioinformatics/18.3.452 · DOI
  62. 2009, Bioinformatics, 25, 2455, 10.1093/bioinformatics/btp452 · DOI
  63. Dessimoz, 2010, Genome biology, 11, R37, 10.1186/gb-2010-11-4-r37 · DOI
  64. Cozzetto, 2005, Proteins, 58, 151, 10.1002/prot.20284 · DOI
  65. 2010, Bioinformatics, 26, 617, 10.1093/bioinformatics/btq008 · DOI
  66. 2009, Bioinformatics, 25, 406, 10.1093/bioinformatics/btn633 · DOI
  67. 1994, Nucleic Acids Research, 22, 4673, 10.1093/nar/22.22.4673 · DOI · Paper page
  68. 2007, Bioinformatics, 23, 2947, 10.1093/bioinformatics/btm404 · DOI

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Metadata

Authors
Aniba, M. R., Poch, O., & Thompson, J. D.
Venue
Nucleic Acids Research
Published
2010-07-17
Volume
38
Issue
21
Pages
7353-7363
ISSN
  • 0305-1048
  • 1362-4962
Cited by
72
References
2
Language
en

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