The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
IMG/M: the integrated metagenome data management and comparative analysis system
Open accessAbstract
The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer).
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The Pfam protein families database
Finn, R. D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J. E., Gavin, O. L., Gunasekaran, P., Ceric, G., Forslund, K., et al. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp985 · Cited by 2,694
KEGG for representation and analysis of molecular networks involving diseases and drugs
Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M., & Hirakawa, M. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp896 · Cited by 2,322
NCBI Reference Sequences: current status, policy and new initiatives
Pruitt, K. D., Tatusova, T., Klimke, W., & Maglott, D. R. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn721 · Cited by 736 · cited 1×
“Using NCBI’s RefSeq (14) as its main source of sequence data, IMG integrates draft and complete microbial genomes from all three domains of life with a large number of plasmids and viruses.”
A Catalog of Reference Genomes from the Human Microbiome
The Human Microbiome Jumpstart Reference Strains Consortium, Nelson, K. E., Weinstock, G. M., Highlander, S. K., Worley, K. C., Creasy, H. H., Wortman, J. R., Rusch, D. B., Mitreva, M., Sodergren, E., et al. (2010) · Science · doi:10.1126/science.1183605 · Cited by 702
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Cited by
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
Nordberg, H., Cantor, M., Dusheyko, S., Hua, S., Poliakov, A., Shabalov, I., Smirnova, T., Grigoriev, I. V., & Dubchak, I. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1069 · Cited by 773
The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics
Escobar-Zepeda, A., Vera-Ponce de León, A., & Sanchez-Flores, A. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00348 · Cited by 363
Sugahara, H., Odamaki, T., Fukuda, S., Kato, T., Xiao, J.-Z., Abe, F., Kikuchi, J., & Ohno, H. (2015) · Scientific Reports · doi:10.1038/srep13548 · Cited by 169
Impact of Next-Generation Sequencing Technology in Plant–Microbe Interaction Study
Kumari, A., Sumer, S., Jalan, B., Nongbri, P. L., & Laskar, M. A. (2017) · Microbial Applications Vol.1 · doi:10.1007/978-3-319-52666-9_13 · Cited by 13
Metadata
- Authors
- Markowitz, V. M., Chen, I.-M. A., Chu, K., Szeto, E., Palaniappan, K., Grechkin, Y., Ratner, A., Jacob, B., Pati, A., Huntemann, M., Liolios, K., Pagani, I., Anderson, I., Mavromatis, K., Ivanova, N. N., & Kyrpides, N. C.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-11-15
- Volume
- 40
- Issue
- D1
- Pages
- D123-D129
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2170089054
- Cited by
- 255
- References
- 4
- FWCI
- 12.34
- Type
- journal article
- Language
- en
- Open access
- gold
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- Markowitz, V. M., Chen, I.-M. A., Chu, K., Szeto, E., Palaniappan, K., Grechkin, Y., Ratner, A., Jacob, B., Pati, A., Huntemann, M., Liolios, K., Pagani, I., Anderson, I., Mavromatis, K., Ivanova, N. N., & Kyrpides, N. C. (2012). IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Research. https://doi.org/10.1093/nar/gkr975
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
