The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Rfam 11.0: 10 years of RNA families
Open accessAbstract
The Rfam database (available via the website at http://rfam.sanger.ac.uk and through our mirror at http://rfam.janelia.org) is a collection of non-coding RNA families, primarily RNAs with a conserved RNA secondary structure, including both RNA genes and mRNA cis-regulatory elements. Each family is represented by a multiple sequence alignment, predicted secondary structure and covariance model. Here we discuss updates to the database in the latest release, Rfam 11.0, including the introduction of genome-based alignments for large families, the introduction of the Rfam Biomart as well as other user interface improvements. Rfam is available under the Creative Commons Zero license.
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Cites
Accelerated Profile HMM Searches
Eddy, S. R. (2011) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002195 · Cited by 6,975
Self-citationmiRBase: integrating microRNA annotation and deep-sequencing data
Kozomara, A., & Griffiths-Jones, S. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1027 · Cited by 3,634
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
Pruitt, K. D., Tatusova, T., Brown, G. R., & Maglott, D. R. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1079 · Cited by 1,149 · cited 1×
“The NCBI Reference Sequence collection (RefSeq) is a non-redundant set of annotated sequences (14).”
BackgroundRfam: Wikipedia, clans and the “decimal” release
Gardner, P. P., Daub, J., Tate, J., Moore, B. L., Osuch, I. H., Griffiths-Jones, S., Finn, R. D., Nawrocki, E. P., Kolbe, D. L., Eddy, S. R., et al. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1129 · Cited by 390
Self-citationComparative Analysis of RNA Families Reveals Distinct Repertoires for Each Domain of Life
Hoeppner, M. P., Gardner, P. P., & Poole, A. M. (2012) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002752 · Cited by 62
Self-citation
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VSEARCH: a versatile open source tool for metagenomics
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Unusual biology across a group comprising more than 15% of domain Bacteria
Brown, C. T., Hug, L. A., Thomas, B. C., Sharon, I., Castelle, C. J., Singh, A., Wilkins, M. J., Wrighton, K. C., Williams, K. H., & Banfield, J. F. (2015) · Nature · doi:10.1038/nature14486 · Cited by 1,216
Cunningham, F., Amode, M. R., Barrell, D., Beal, K., Billis, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fitzgerald, S., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1010 · Cited by 1,115
The UCSC Genome Browser database: 2015 update
Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1177 · Cited by 874
The BioMart community portal: an innovative alternative to large, centralized data repositories
Smedley, D., Haider, S., Durinck, S., Pandini, L., Provero, P., Allen, J., Arnaiz, O., Awedh, M. H., Baldock, R., Barbiera, G., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv350 · Cited by 755
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Metadata
- Authors
- Burge, S. W., Daub, J., Eberhardt, R., Tate, J., Barquist, L., Nawrocki, E. P., Eddy, S. R., Gardner, P. P., & Bateman, A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-11-02
- Volume
- 41
- Issue
- D1
- Pages
- D226-D232
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2166706771
- Cited by
- 806
- References
- 5
- FWCI
- 39.85
- Type
- journal article
- Language
- en
- Open access
- gold
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- Burge, S. W., Daub, J., Eberhardt, R., Tate, J., Barquist, L., Nawrocki, E. P., Eddy, S. R., Gardner, P. P., & Bateman, A. (2013). Rfam 11.0: 10 years of RNA families. Nucleic Acids Research. https://doi.org/10.1093/nar/gks1005
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