The DOI matches its Crossref record; 59 of the 59 references it cites were found in a registry or an index.
The UCSC Genome Browser database: 2015 update
Open accessAbstract
Launched in 2001 to showcase the draft human genome assembly, the UCSC Genome Browser database (http://genome.ucsc.edu) and associated tools continue to grow, providing a comprehensive resource of genome assemblies and annotations to scientists and students worldwide. Highlights of the past year include the release of a browser for the first new human genome reference assembly in 4 years in December 2013 (GRCh38, UCSC hg38), a watershed comparative genomics annotation (100-species multiple alignment and conservation) and a novel distribution mechanism for the browser (GBiB: Genome Browser in a Box). We created browsers for new species (Chinese hamster, elephant shark, minke whale), 'mined the web' for DNA sequences and expanded the browser display with stacked color graphs and region highlighting. As our user community increasingly adopts the UCSC track hub and assembly hub representations for sharing large-scale genomic annotation data sets and genome sequencing projects, our menu of public data hubs has tripled.
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Cites
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Self-citationAn integrated map of genetic variation from 1,092 human genomes
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Self-citationGREAT improves functional interpretation of cis-regulatory regions
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Cited by
The Ensembl Variant Effect Predictor
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The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog)
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A high-coverage Neandertal genome from Vindija Cave in Croatia
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Metadata
- Authors
- Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., Harte, R. A., Heitner, S., Hickey, G., Hinrichs, A. S., Hubley, R., Karolchik, D., Learned, K., Lee, B. T., Li, C. H., Miga, K. H., Nguyen, N., Paten, B., Raney, B. J., Smit, A. F. A., Speir, M. L., Zweig, A. S., Haussler, D., Kuhn, R. M., & Kent, W. J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-11-26
- Volume
- 43
- Issue
- D1
- Pages
- D670-D681
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2165064122
- Cited by
- 874
- References
- 59
- FWCI
- 50.01
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: The UCSC Genome Browser database: 2015 update. https://app.cochat.ai/papers/10.1093/nar/gku1177
- The paper
- Rosenbloom, K. R., Armstrong, J., Barber, G. P., Casper, J., Clawson, H., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M., Harte, R. A., Heitner, S., Hickey, G., Hinrichs, A. S., Hubley, R., Karolchik, D., Learned, K., Lee, B. T., Li, C. H., . . . Kent, W. J. (2015). The UCSC Genome Browser database: 2015 update. Nucleic Acids Research. https://doi.org/10.1093/nar/gku1177
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
