The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Genomicus: five genome browsers for comparative genomics in eukaryota
Open accessAbstract
Genomicus (http://www.dyogen.ens.fr/genomicus/) is a database and an online tool that allows easy comparative genomic visualization in >150 eukaryote genomes. It provides a way to explore spatial information related to gene organization within and between genomes and temporal relationships related to gene and genome evolution. For the specific vertebrate phylum, it also provides access to ancestral gene order reconstructions and conserved non-coding elements information. We extended the Genomicus database originally dedicated to vertebrate to four new clades, including plants, non-vertebrate metazoa, protists and fungi. This visualization tool allows evolutionary phylogenomics analysis and exploration. Here, we describe the graphical modules of Genomicus and show how it is capable of revealing differential gene loss and gain, segmental or genome duplications and study the evolution of a locus through homology relationships.
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Cites
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Vilella, A. J., Severin, J., Ureta-Vidal, A., Heng, L., Durbin, R., & Birney, E. (2009) · Genome Research · doi:10.1101/gr.073585.107 · Cited by 1,238
Keeling, P. J., Burger, G., Durnford, D. G., Lang, B. F., Lee, R. W., Pearlman, R. E., Roger, A. J., & Gray, M. W. (2005) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2005.09.005 · Cited by 579
Cited by
Ensembl comparative genomics resources
Herrero, J., Muffato, M., Beal, K., Fitzgerald, S., Gordon, L., Pignatelli, M., Vilella, A. J., Searle, S. M. J., Amode, R., Brent, S., et al. (2016) · Database · doi:10.1093/database/bav096 · Cited by 434
Self-citationA new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.
Braasch, I., Peterson, S. M., Desvignes, T., McCluskey, B. M., Batzel, P., & Postlethwait, J. H. (2015) · Journal of Experimental Zoology Part B: Molecular and Developmental Evolution · doi:10.1002/jez.b.22589 · Cited by 122
pnp4a Is the Causal Gene of the Medaka Iridophore Mutant guanineless
Kimura, T., Takehana, Y., & Naruse, K. (2017) · G3 Genes|Genomes|Genetics · doi:10.1534/g3.117.040675 · Cited by 46
Pogo-like Transposases Have Been Repeatedly Domesticated into CENP-B-Related Proteins
Mateo, L., & González, J. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu153 · Cited by 44
Metadata
- Authors
- Louis, A., Muffato, M., & Roest Crollius, H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-11-26
- Volume
- 41
- Issue
- D1
- Pages
- D700-D705
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2128516932
- Cited by
- 159
- References
- 2
- FWCI
- 6.74
- Type
- journal article
- Language
- en
- Open access
- gold
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- Louis, A., Muffato, M., & Roest Crollius, H. (2012). Genomicus: five genome browsers for comparative genomics in eukaryota. Nucleic Acids Research. https://doi.org/10.1093/nar/gks1156
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