The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
Open accessAbstract
T-REX (Tree and reticulogram REConstruction) is a web server dedicated to the reconstruction of phylogenetic trees, reticulation networks and to the inference of horizontal gene transfer (HGT) events. T-REX includes several popular bioinformatics applications such as MUSCLE, MAFFT, Neighbor Joining, NINJA, BioNJ, PhyML, RAxML, random phylogenetic tree generator and some well-known sequence-to-distance transformation models. It also comprises fast and effective methods for inferring phylogenetic trees from complete and incomplete distance matrices as well as for reconstructing reticulograms and HGT networks, including the detection and validation of complete and partial gene transfers, inference of consensus HGT scenarios and interactive HGT identification, developed by the authors. The included methods allows for validating and visualizing phylogenetic trees and networks which can be built from distance or sequence data. The web server is available at: www.trex.uqam.ca.
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Evolutionary trees from DNA sequences: A maximum likelihood approach.
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JUKES, T. H., & CANTOR, C. R. (1969) · Mammalian Protein Metabolism · doi:10.1016/b978-1-4832-3211-9.50009-7 · Cited by 11,032
Whelan, S., & Goldman, N. (2001) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a003851 · Cited by 2,849
Prokaryotic Evolution in Light of Gene Transfer
Gogarten, J. P., Doolittle, W. F., & Lawrence, J. G. (2002) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a004046 · Cited by 986
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Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees
Subramanian, B., Gao, S., Lercher, M. J., Hu, S., & Chen, W.-H. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz357 · Cited by 1,013
NGPhylogeny.fr: new generation phylogenetic services for non-specialists
Lemoine, F., Correia, D., Lefort, V., Doppelt-Azeroual, O., Mareuil, F., Cohen-Boulakia, S., & Gascuel, O. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz303 · Cited by 915
Inferring ancient divergences requires genes with strong phylogenetic signals
Salichos, L., & Rokas, A. (2013) · Nature · doi:10.1038/nature12130 · Cited by 616
Mutational dynamics between primary and relapse neuroblastomas
Schramm, A., Köster, J., Assenov, Y., Althoff, K., Peifer, M., Mahlow, E., Odersky, A., Beisser, D., Ernst, C., Henssen, A. G., et al. (2015) · Nature Genetics · doi:10.1038/ng.3349 · Cited by 304
Metadata
- Authors
- Boc, A., Diallo, A. B., & Makarenkov, V.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-06-06
- Volume
- 40
- Issue
- W1
- Pages
- W573-W579
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1977358834
- Cited by
- 479
- References
- 6
- FWCI
- 9.06
- Type
- journal article
- Language
- en
- Open access
- gold
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