The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors
Open accessAbstract
Transcription factors (TFs) are key regulators for gene expression. Here we updated the animal TF database AnimalTFDB to version 2.0 (http://bioinfo.life.hust.edu.cn/AnimalTFDB/). Using the improved prediction pipeline, we identified 72 336 TF genes, 21 053 transcription co-factor genes and 6502 chromatin remodeling factor genes from 65 species covering main animal lineages. Besides the abundant annotations (basic information, gene model, protein functional domain, gene ontology, pathway, protein interaction, ortholog and paralog, etc.) in the previous version, we made several new features and functions in the updated version. These new features are: (i) gene expression from RNA-Seq for nine model species, (ii) gene phenotype information, (iii) multiple sequence alignment of TF DNA-binding domains, and the weblogo and phylogenetic tree based on the alignment, (iv) a TF prediction server to identify new TFs from input sequences and (v) a BLAST server to search against TFs in AnimalTFDB. A new nice web interface was designed for AnimalTFDB 2.0 allowing users to browse and search all data in the database. We aim to maintain the AnimalTFDB as a solid resource for TF identification and studies of transcription regulation and comparative genomics.
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BBKNN: fast batch alignment of single cell transcriptomes
Polański, K., Young, M. D., Miao, Z., Meyer, K. B., Teichmann, S. A., & Park, J.-E. (2020) · Bioinformatics · doi:10.1093/bioinformatics/btz625 · Cited by 932
Metadata
- Authors
- Zhang, H.-M., Liu, T., Liu, C.-J., Song, S., Zhang, X., Liu, W., Jia, H., Xue, Y., & Guo, A.-Y.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-09-27
- Volume
- 43
- Issue
- D1
- Pages
- D76-D81
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2135553161
- Cited by
- 303
- References
- 11
- FWCI
- 5.60
- Type
- journal article
- Language
- en
- Open access
- gold
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- Zhang, H.-M., Liu, T., Liu, C.-J., Song, S., Zhang, X., Liu, W., Jia, H., Xue, Y., & Guo, A.-Y. (2015). AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic Acids Research. https://doi.org/10.1093/nar/gku887
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