The DOI matches its Crossref record; 55 of the 55 references it cites were found in a registry or an index.
PLAZA 3.0: an access point for plant comparative genomics
Open accessAbstract
Comparative sequence analysis has significantly altered our view on the complexity of genome organization and gene functions in different kingdoms. PLAZA 3.0 is designed to make comparative genomics data for plants available through a user-friendly web interface. Structural and functional annotation, gene families, protein domains, phylogenetic trees and detailed information about genome organization can easily be queried and visualized. Compared with the first version released in 2009, which featured nine organisms, the number of integrated genomes is more than four times higher, and now covers 37 plant species. The new species provide a wider phylogenetic range as well as a more in-depth sampling of specific clades, and genomes of additional crop species are present. The functional annotation has been expanded and now comprises data from Gene Ontology, MapMan, UniProtKB/Swiss-Prot, PlnTFDB and PlantTFDB. Furthermore, we improved the algorithms to transfer functional annotation from well-characterized plant genomes to other species. The additional data and new features make PLAZA 3.0 (http://bioinformatics.psb.ugent.be/plaza/) a versatile and comprehensible resource for users wanting to explore genome information to study different aspects of plant biology, both in model and non-model organisms.
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Cites
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Cited by
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
Tian, T., Liu, Y., Yan, H., You, Q., Yi, X., Du, Z., Xu, W., & Su, Z. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx382 · Cited by 2,318
Houben, M., & Van de Poel, B. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00695 · Cited by 420
Learning from Co-expression Networks: Possibilities and Challenges
Serin, E. A. R., Nijveen, H., Hilhorst, H. W. M., & Ligterink, W. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.00444 · Cited by 304
Dell’Acqua, M., Gatti, D. M., Pea, G., Cattonaro, F., Coppens, F., Magris, G., Hlaing, A. L., Aung, H. H., Nelissen, H., Baute, J., et al. (2015) · Genome Biology · doi:10.1186/s13059-015-0716-z · Cited by 272
Self-citationCapturing the phosphorylation and protein interaction landscape of the plant TOR kinase
Van Leene, J., Han, C., Gadeyne, A., Eeckhout, D., Matthijs, C., Cannoot, B., De Winne, N., Persiau, G., Van De Slijke, E., Van de Cotte, B., et al. (2019) · Nature Plants · doi:10.1038/s41477-019-0378-z · Cited by 266
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Metadata
- Authors
- Proost, S., Van Bel, M., Vaneechoutte, D., Van de Peer, Y., Inzé, D., Mueller-Roeber, B., & Vandepoele, K.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-10-16
- Volume
- 43
- Issue
- D1
- Pages
- D974-D981
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2109579035
- Cited by
- 317
- References
- 55
- FWCI
- 15.70
- Type
- journal article
- Language
- en
- Open access
- gold
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