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agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update

Open access
Tian, Tian, Liu, Yue, Yan, Hengyu, You, Qi, Yi, Xin, Du, Zhou, Xu, Wenying, Su, Zhen·2017·Nucleic Acids Research

Abstract

The agriGO platform, which has been serving the scientific community for >10 years, specifically focuses on gene ontology (GO) enrichment analyses of plant and agricultural species. We continuously maintain and update the databases and accommodate the various requests of our global users. Here, we present our updated agriGO that has a largely expanded number of supporting species (394) and datatypes (865). In addition, a larger number of species have been classified into groups covering crops, vegetables, fish, birds and insects closely related to the agricultural community. We further improved the computational efficiency, including the batch analysis and P-value distribution (PVD), and the user-friendliness of the web pages. More visualization features were added to the platform, including SEACOMPARE (cross comparison of singular enrichment analysis), direct acyclic graph (DAG) and Scatter Plots, which can be merged by choosing any significant GO term. The updated platform agriGO v2.0 is now publicly accessible at http://systemsbiology.cau.edu.cn/agriGOv2/.

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Metadata

Authors
Tian, T., Liu, Y., Yan, H., You, Q., Yi, X., Du, Z., Xu, W., & Su, Z.
Venue
Nucleic Acids Research
Published
2017-05-04
Volume
45
Issue
W1
Pages
W122-W129
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2611604995
Cited by
2,318
References
50
FWCI
67.94
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update. https://app.cochat.ai/papers/10.1093/nar/gkx382
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Tian, T., Liu, Y., Yan, H., You, Q., Yi, X., Du, Z., Xu, W., & Su, Z. (2017). agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update. Nucleic Acids Research. https://doi.org/10.1093/nar/gkx382

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