The DOI matches its Crossref record; 56 of the 56 references it cites were found in a registry or an index.
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
Open accessAbstract
Genome wide analysis of orthologous clusters is an important component of comparative genomics studies. Identifying the overlap among orthologous clusters can enable us to elucidate the function and evolution of proteins across multiple species. Here, we report a web platform named OrthoVenn that is useful for genome wide comparisons and visualization of orthologous clusters. OrthoVenn provides coverage of vertebrates, metazoa, protists, fungi, plants and bacteria for the comparison of orthologous clusters and also supports uploading of customized protein sequences from user-defined species. An interactive Venn diagram, summary counts, and functional summaries of the disjunction and intersection of clusters shared between species are displayed as part of the OrthoVenn result. OrthoVenn also includes in-depth views of the clusters using various sequence analysis tools. Furthermore, OrthoVenn identifies orthologous clusters of single copy genes and allows for a customized search of clusters of specific genes through key words or BLAST. OrthoVenn is an efficient and user-friendly web server freely accessible at http://probes.pw.usda.gov/OrthoVenn or http://aegilops.wheat.ucdavis.edu/OrthoVenn.
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Cites
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Self-citationMEME SUITE: tools for motif discovery and searching
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Cited by
Xu, L., Dong, Z., Fang, L., Luo, Y., Wei, Z., Guo, H., Zhang, G., Gu, Y. Q., Coleman-Derr, D., Xia, Q., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz333 · Cited by 850
Self-citationOrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
Sun, J., Lu, F., Luo, Y., Bie, L., Xu, L., & Wang, Y. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad313 · Cited by 528
Self-citationKang, H.-M., Byeon, E., Jeong, H., Kim, M.-S., Chen, Q., & Lee, J.-S. (2021) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2020.124207 · Cited by 267
Rifat, D., Chen, L., Kreiswirth, B. N., & Nuermberger, E. L. (2021) · mBio · doi:10.1128/mbio.01049-21 · Cited by 76
Kim, J. H., Cheng, L. W., Chan, K. L., Tam, C. C., Mahoney, N., Friedman, M., Shilman, M. M., & Land, K. M. (2020) · Antibiotics · doi:10.3390/antibiotics9110812 · Cited by 71
Metadata
- Authors
- Wang, Y., Coleman-Derr, D., Chen, G., & Gu, Y. Q.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-05-11
- Volume
- 43
- Issue
- W1
- Pages
- W78-W84
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W1484660603
- Cited by
- 888
- References
- 56
- FWCI
- 15.82
- Type
- journal article
- Language
- en
- Open access
- gold
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