The DOI matches its Crossref record; 31 of the 31 references it cites were found in a registry or an index.
OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species
Open accessAbstract
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new features that facilitate the comparative analysis of orthologous clusters among up to 12 species. Additionally, this update offers improvements to data visualization and interpretation, including an occurrence pattern table for interrogating the overlap of each orthologous group for the queried species. Within the occurrence table, the functional annotations and summaries of the disjunctions and intersections of clusters between the chosen species can be displayed through an interactive Venn diagram. To facilitate a broader range of comparisons, a larger number of species, including vertebrates, metazoa, protists, fungi, plants and bacteria, have been added in OrthoVenn2. Finally, a stand-alone version is available to perform large dataset comparisons and to visualize results locally without limitation of species number. In summary, OrthoVenn2 is an efficient and user-friendly web server freely accessible at https://orthovenn2.bioinfotoolkits.net.
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Self-citationZdobnov, E. M., Tegenfeldt, F., Kuznetsov, D., Waterhouse, R. M., Simão, F. A., Ioannidis, P., Seppey, M., Loetscher, A., & Kriventseva, E. V. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw1119 · Cited by 438
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Cited by
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
Sun, J., Lu, F., Luo, Y., Bie, L., Xu, L., & Wang, Y. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad313 · Cited by 528
Self-citationRifat, D., Chen, L., Kreiswirth, B. N., & Nuermberger, E. L. (2021) · mBio · doi:10.1128/mbio.01049-21 · Cited by 76
Jeon, S., Kim, H., Choi, Y., Cho, S., Seo, M., & Kim, H. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.697351 · Cited by 23
Let, M., Majhi, K., Halder, U., De, A., Saha, D., Chitikineni, A., Roychowdhury, T., Varshney, R. K., & Bandopadhyay, R. (2023) · Journal of Environmental Chemical Engineering · doi:10.1016/j.jece.2023.109791 · Cited by 18
Metadata
- Authors
- Xu, L., Dong, Z., Fang, L., Luo, Y., Wei, Z., Guo, H., Zhang, G., Gu, Y. Q., Coleman-Derr, D., Xia, Q., & Wang, Y.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-05-04
- Volume
- 47
- Issue
- W1
- Pages
- W52-W58
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W4239954008
- Cited by
- 850
- References
- 31
- FWCI
- 33.01
- Type
- journal article
- Language
- en
- Open access
- gold
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- Xu, L., Dong, Z., Fang, L., Luo, Y., Wei, Z., Guo, H., Zhang, G., Gu, Y. Q., Coleman-Derr, D., Xia, Q., & Wang, Y. (2019). OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species. Nucleic Acids Research. https://doi.org/10.1093/nar/gkz333
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