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iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications

Open access
Autour, Alexis, Westhof, Eric, Ryckelynck, Michael·2016·Nucleic Acids Research

Abstract

Using random mutagenesis and high throughput screening by microfluidic-assisted In Vitro Compartmentalization, we report the isolation of an order of magnitude times brighter mutants of the light-up RNA aptamers Spinach that are far less salt-sensitive and with a much higher thermal stability than the parent molecule. Further engineering gave iSpinach, a molecule with folding and fluorescence properties surpassing those of all currently known aptamer based on the fluorogenic co-factor 3,5-difluoro-4-hydroxybenzylidene imidazolinone (DFHBI). We illustrate the potential of iSpinach in a new sensitive and high throughput-compatible fluorogenic assay that measures co-transcriptionally the catalytic constant (kcat) of a model ribozyme.

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Metadata

Authors
Autour, A., Westhof, E., & Ryckelynck, M.
Venue
Nucleic Acids Research
Published
2016-03-01
Volume
44
Issue
6
Pages
2491-2500
ISSN
  • 0305-1048 (ISSN-L)
  • 1362-4962
OpenAlex
W2293575659
Cited by
168
References
2
FWCI
9.18
Type
journal article
Language
en
Open access
gold

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CoChat. (2026). Citation check: iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications. https://app.cochat.ai/papers/10.1093/nar/gkw083
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Autour, A., Westhof, E., & Ryckelynck, M. (2016). iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications. Nucleic Acids Research. https://doi.org/10.1093/nar/gkw083

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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.