Epigenetic changes in histone acetylation underpin resistance to the topoisomerase I inhibitor irinotecan
Open accessAbstract
The topoisomerase I (TOP1) inhibitor irinotecan triggers cell death by trapping TOP1 on DNA, generating cytotoxic protein-linked DNA breaks (PDBs). Despite its wide application in a variety of solid tumors, the mechanisms of cancer cell resistance to irinotecan remains poorly understood. Here, we generated colorectal cancer (CRC) cell models for irinotecan resistance and report that resistance is neither due to downregulation of the main cellular target of irinotecan TOP1 nor upregulation of the key TOP1 PDB repair factor TDP1. Instead, the faster repair of PDBs underlies resistance, which is associated with perturbed histone H4K16 acetylation. Subsequent treatment of irinotecan-resistant, but not parental, CRC cells with histone deacetylase (HDAC) inhibitors can effectively overcome resistance. Immunohistochemical analyses of CRC tissues further corroborate the importance of histone H4K16 acetylation in CRC. Finally, the resistant clones exhibit cross-resistance with oxaliplatin but not with ionising radiation or 5-fluoruracil, suggesting that the latter two could be employed following loss of irinotecan response. These findings identify perturbed chromatin acetylation in irinotecan resistance and establish HDAC inhibitors as potential therapeutic means to overcome resistance.
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Inhibiting HDACs can overcome resistance to chemotherapy-induced DNA damage in CRC cells by different molecular mechanisms, such as downregulating thymidylate synthase gene expression or modifying chromatin condensation, and subsequently inducing cell death.
“Mechanistically, various studies suggest that inhibiting HDACs can overcome resistance to chemotherapy-induced DNA damage in CRC cells by different molecular mechanisms, such as downregulating thymidylate synthase gene expression or modifying chromatin condensation, and subsequently inducing cell death [58,59,165].”
From Mechanisms and Strategies to Overcome Drug Resistance in Colorectal Cancer (2025) · cites this paper as [59]
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Experimental — accuracy not yet measuredAlterations in histone modifications can regulate gene expression and chromatin structure, further contributing to resistance against chemotherapy drugs.
“Alterations in histone modifications can regulate gene expression and chromatin structure, further contributing to resistance against chemotherapy drugs [57,58,59].”
From Mechanisms and Strategies to Overcome Drug Resistance in Colorectal Cancer (2025) · cites this paper as [59]
The Discussion (page not specified) links reduced histone H4K16 acetylation to altered DNA repair and irinotecan resistance, supporting the role of histone modifications in chemotherapy resistance. It does not establish that regulation of gene expression contributes to that resistance; instead, it reports no change in the levels of the examined DNA-repair factors. (LLM, conf=0.86)
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Cites
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Acetylation limits 53BP1 association with damaged chromatin to promote homologous recombination
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- Authors
- Meisenberg, C., Ashour, M. E., El-Shafie, L., Liao, C., Hodgson, A., Pilborough, A., Khurram, S. A., Downs, J. A., Ward, S. E., & El-Khamisy, S. F.
- Affiliations
- University of Sussex (GB)
- Zewail City of Science and Technology (EG)
- University of Sheffield (GB)
- ORCID
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-10-26
- Volume
- 45
- Issue
- 3
- Pages
- gkw1026
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC5388393
- OpenAlex
- W2540793423
- Cited by
- 59
- References
- 2
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 10 · 2023: 10 · 2022: 4 · 2021: 6 · 2020: 5 · 2019: 5 · 2018: 8 · 2017: 7 · 2016: 1
- FWCI
- 3.64
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nucleic Acids Research (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- White Rose Research Online (University of Leeds, The University of Sheffield, University of York) (acceptedVersion)
- ORCA Online Research @Cardiff (Cardiff University) (acceptedVersion)
- Funders
- Wellcome Trust (103844, 103844/Z/14/Z)
- National Institute for Health and Care Research (CL-2010-04-004)
- University of Sheffield (103844)
- Lister Institute of Preventive Medicine
- Medical Research Council (MR/N02155X/1, MR/N02155X/2)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cancer therapeutics and mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- irinotecan resistance, topoisomerase I inhibitor, histone H4K16 acetylation, histone deacetylase inhibitors, TDP1, DNA repair, colorectal cancer, epigenetic regulation, chromatin acetylation
- MeSH terms
- Irinotecan, Acetylation, Camptothecin, DNA Repair, DNA Topoisomerases, Type I, Histones, Humans, Models, Biological, Phosphoric Diester Hydrolases, Colorectal Neoplasms, Drug Resistance, Neoplasm, Epigenesis, Genetic, Cell Line, Tumor, DNA Breaks, Double-Stranded, Histone Deacetylase Inhibitors, Topoisomerase I Inhibitors
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