The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Phylogenetic Relationships and Ancient Incomplete Lineage Sorting Among Cichlid Fishes in Lake Tanganyika as Revealed by Analysis of the Insertion of Retroposons
Open accessAbstract
Lake Tanganyika harbors numerous endemic species of extremely diverse cichlid fish that have been classified into 12 major taxonomic groups known as tribes. Analysis of short interspersed element (SINE) insertion data has been acknowledged to be a powerful tool for the elucidation of phylogenetic relationships, and we applied this method in an attempt to clarify such relationships among these cichlids. We studied insertion patterns of 38 SINEs in total, 24 of which supported the monophyly of three clades. The other 14 loci revealed extensive incongruence in terms of the patterns of SINE insertions. These incongruencies most likely stem from a period of adaptive radiation. One possible explanation for this phenomenon is the extensive incomplete lineage sorting of alleles for the presence or absence of a SINE during successive speciation events which took place about 5-10 MYA. The present study is the first to report the successful application of the SINE method in demonstrating the existence of such possible "ancient" incomplete lineage sorting. We discuss the possibility that it might potentially be very difficult to resolve the species phylogeny of a group that radiated explosively, even by resolving the genealogies of more than 10 nuclear loci, as a consequence of incomplete lineage sorting during speciation.
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Cites
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
Shimamura, M., Yasue, H., Ohshima, K., Abe, H., Kato, H., Kishiro, T., Goto, M., Munechika, I., & Okada, N. (1997) · Nature · doi:10.1038/41759 · Cited by 399 · cited 1×
“In recent years, short interspersed elements (SINEs) have been shown to be powerful phylogenetic markers (Murata et al. 1993, 1996; Shimamura et al. 1997; Hamada et al. 1998a; Takahashi et al. 1998, 2001; Nikaido, Rooney, and Okada 1999).”
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Cited by
Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
Rosenberg, N. A., & Nordborg, M. (2002) · Nature Reviews Genetics · doi:10.1038/nrg795 · Cited by 750
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
Suh, A., Smeds, L., & Ellegren, H. (2015) · PLOS Biology · doi:10.1371/journal.pbio.1002224 · Cited by 277
Primate jumping genes elucidate strepsirrhine phylogeny.
Roos, C., Schmitz, J., & Zischler, H. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403852101 · Cited by 262
SINEs, evolution and genome structure in the opossum
Gu, W., Ray, D. A., Walker, J. A., Barnes, E. W., Gentles, A. J., Samollow, P. B., Jurka, J., Batzer, M. A., & Pollock, D. D. (2007) · Gene · doi:10.1016/j.gene.2007.02.028 · Cited by 18
Metadata
- Authors
- Takahashi, K., Terai, Y., Nishida, M., & Okada, N.
- Venue
- Molecular Biology and Evolution
- Publisher
- Oxford University Press (OUP)
- Published
- 2001-11-01
- Volume
- 18
- Issue
- 11
- Pages
- 2057-2066
- ISSN
- 0737-4038 (ISSN-L)
- 1537-1719
- OpenAlex
- W2099400989
- Cited by
- 201
- References
- 1
- FWCI
- 11.92
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Takahashi, K., Terai, Y., Nishida, M., & Okada, N. (2001). Phylogenetic Relationships and Ancient Incomplete Lineage Sorting Among Cichlid Fishes in Lake Tanganyika as Revealed by Analysis of the Insertion of Retroposons. Molecular Biology and Evolution. https://doi.org/10.1093/oxfordjournals.molbev.a003747
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