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Enzymes of glycerol-3-phosphate pathway in triacylglycerol synthesis in plants: Function, biotechnological application and evolution

Maraschin, F. D. S., Kulcheski, F. R., Segatto, A. L. A., Trenz, T. S., Barrientos-Díaz, O., Margis-Pinheiro, M. M. A. N., Margis, R., & Turchetto‐Zolet, A. C. (2018) · Progress in Lipid Research · doi:10.1016/j.plipres.2018.12.001 · Cited by 50

Longevity Is Linked to Mitochondrial Mutation Rates in Rockfish: A Test Using Poisson Regression

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Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa

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Structure and Evolution of the r/b Chromosomal Regions in Rice, Maize and SorghumSequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY542311, AF466202, AF466203, and AY542310.

Swigoňová, Z., Bennetzen, J. L., & Messing, J. W. (2004) · Genetics · doi:10.1534/genetics.104.034629 · Cited by 49

Genic Mutation Rates in Mammals: Local Similarity, Chromosomal Heterogeneity, and X-Versus-Autosome Disparity

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Maximum Likelihood as an Alternative to Parsimony for Inferring Phylogeny Using Nucleotide Sequence Data

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Proteome Adaptation to High Temperatures in the Ectothermic Hydrothermal Vent Pompeii Worm

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Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous Substitution Rates

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First characterization of endophytic Corynespora cassiicola isolates with variant cassiicolin genes recovered from rubber trees in Brazil

Déon, M., Scomparin, A. X., Tixier, A., Mattos, C. R. R., Leroy, T., Séguin, M., Roeckel‐Drevet, P., & Pujade‐Renaud, V. (2012) · Fungal Diversity · doi:10.1007/s13225-012-0169-6 · Cited by 48

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Adaptive Evolution of the Water Stress-Induced Gene Asr2 in Lycopersicon Species Dwelling in Arid Habitats

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Comparative structural and evolutionary analyses predict functional sites in the artemisinin resistance malaria protein K13

Coppée, R., Jeffares, D. C., Miteva, M. A., Sabbagh, A., & Clain, J. (2019) · Scientific Reports · doi:10.1038/s41598-019-47034-6 · Cited by 53

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Evolution of Olfactory Receptor Genes in Primates Dominated by Birth-and-Death Process

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Comparative Analyses Reveal a Complex History of Molecular Evolution for Human MYH16

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Estimates of the Effect of Natural Selection on Protein-Coding Content

Yap, V. B., Lindsay, H. A., Easteal, S., & Huttley, G. A. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp232 · Cited by 47

Long-Range and Targeted Ectopic Recombination between the Two Homeologous Chromosomes 11 and 12 in Oryza Species

Jacquemin, J., Chaparro, C., Laudié, M., Berger, A., Gavory, F., Goicoechea, J. L., Wing, R. A., & Cooke, R. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr144 · Cited by 47

ModelOMatic: Fast and Automated Model Selection between RY, Nucleotide, Amino Acid, and Codon Substitution Models

Whelan, S., Allen, J. E., Blackburne, B. P., & Talavera, D. (2014) · Systematic Biology · doi:10.1093/sysbio/syu062 · Cited by 47

Predicting Evolutionary Site Variability from Structure in Viral Proteins: Buriedness, Packing, Flexibility, and Design

Shahmoradi, A., Sydykova, D. K., Spielman, S. J., Jackson, E. L., Dawson, E. T., Meyer, A. G., & Wilke, C. O. (2014) · Journal of Molecular Evolution · doi:10.1007/s00239-014-9644-x · Cited by 50

Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation

Yoshida, M., Ishikura, Y., Moritaki, T., Shoguchi, E., Shimizu, K. K., Sese, J., & Ogura, A. (2011) · Gene · doi:10.1016/j.gene.2011.05.027 · Cited by 48

Synonymous Substitutions Substantially Improve Evolutionary Inference from Highly Diverged Proteins

Seo, T., & Kishino, H. (2008) · Systematic Biology · doi:10.1080/10635150802158670 · Cited by 47

Neutral Evolution of the Sex-Determining Gene transformer in Drosophila

McAllister, B. F., & McVean, G. (2000) · Genetics · doi:10.1093/genetics/154.4.1711 · Cited by 47

Fluctuating Mutation Bias and the Evolution of Base Composition in Drosophila

Rodrı́guez-Trelles, F., Tarrı́o, R., & Ayala, F. J. (2000) · Journal of Molecular Evolution · doi:10.1007/s002399910001 · Cited by 47

Ancestral gene duplications in mosses characterized by integrated phylogenomic analyses

Gao, B., Chen, M., Li, X., Liang, Y., Zhang, D., Wood, A. J., Oliver, M. J., & Zhang, J. (2020) · Journal of Systematics and Evolution · doi:10.1111/jse.12683 · Cited by 47

Gene flow networks among American Aedes aegypti populations

da Silva, A. G., da Cunha, I. C. L., Santos, W. S., Luz, S. L. B., Ribolla, P. E. M., & Abad‐Franch, F. (2012) · Evolutionary Applications · doi:10.1111/j.1752-4571.2012.00244.x · Cited by 46

Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses

Zhong, B., Yonezawa, T., Zhong, Y., & Hasegawa, M. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005297 · Cited by 46

Codon substitution models based on residue similarity and their applications

Liu, X., Liu, H., Guo, W., & Yu, K. (2012) · Gene · doi:10.1016/j.gene.2012.07.075 · Cited by 1

An Empirical Codon Model for Protein Sequence Evolution

Kosiol, C., Holmes, I. H., & Goldman, N. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm064 · Cited by 192

Advantages of a Mechanistic Codon Substitution Model for Evolutionary Analysis of Protein-Coding Sequences

Miyazawa, S. (2011) · PLoS ONE · doi:10.1371/journal.pone.0028892 · Cited by 18

An Empirical Examination of the Utility of Codon-Substitution Models in Phylogeny Reconstruction

Ren, F., Tanaka, H., & Yang, Z. (2005) · Systematic Biology · doi:10.1080/10635150500354688 · Cited by 168

A codon model of nucleotide substitution with selection on synonymous codon usage

Kubatko, L. S., Shah, P., Herbei, R., & Gilchrist, M. A. (2014) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2015.08.026 · Cited by 18