Goldman, Nick

A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach

Whelan, S., & Goldman, N. (2001) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 2,849

Codon-substitution models for heterogeneous selection pressure at amino acid sites

Yang, Z., Nielsen, R., Goldman, N., & Pedersen, A.-M. K. (2000) · Genetics

Evolution and Genetic DynamicsGenomics and Phylogenetic Studies

Cited by 2,286

A codon-based model of nucleotide substitution for protein-coding DNA sequences.

Goldman, N., & Yang, Z. (1994) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 1,960

Towards Practical, High-Capacity, Low-Maintenance Information Storage in Synthesized DNA

Goldman, N., Bertone, P., Chen, S., Dessimoz, C., LeProust, E. M., Sipos, B., & Birney, E. (2013) · Nature

DNA and Biological ComputingAdvanced biosensing and bioanalysis techniques

Cited by 1,220

A high-resolution map of human evolutionary constraint using 29 mammals

Broad Institute Sequencing Platform and Whole Genome Assembly Team, Lindblad-Toh, K., Baylor College of Medicine Human Genome Sequencing Center Sequencing Team, Genome Institute at Washington University, Garber, M., Zuk, O., Lin, M. F., Parker, B. J., Washietl, S., Kheradpour, P., et al. (2011) · Nature

Genomics and Phylogenetic StudiesChromosomal and Genetic Variations

Cited by 1,108

Statistical tests of models of DNA substitution

Goldman, N. (1993) · Journal of Molecular Evolution

Genomics and Phylogenetic StudiesRNA and protein synthesis mechanisms

Cited by 736

Systematic evaluation of spliced alignment programs for RNA-seq data

The RGASP Consortium, Engström, P. G., Steijger, T., Sipos, B., Grant, G. R., Kahles, A., Rätsch, G., Goldman, N., Hubbard, T. J., Harrow, J., et al. (2013) · Nature Methods

Genomics and Phylogenetic StudiesRNA Research and Splicing

Cited by 513

Assessing the Impact of Secondary Structure and Solvent Accessibility on Protein Evolution

Goldman, N., Thorne, J. L., & Jones, D. T. (1998) · Genetics

Evolution and Genetic DynamicsProtein Structure and Dynamics

Cited by 281

A new criterion and method for amino acid classification

Kosiol, C., Goldman, N., & H. Buttimore, N. (2004) · Journal of Theoretical Biology

Genomics and Phylogenetic StudiesFractal and DNA sequence analysis

Cited by 70

Detecting Interspecific Positive Selection Using Convolutional Neural Networks

West, C., Walker, C. R., Arasti, S., Vasilev, V., Xu, X., De Maio, N., & Goldman, N. (2025) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 1

Detecting interspecific positive selection using convolutional neural networks

West, C., Walker, C. R., Arasti, S., Vasilev, V., Xu, X., De Maio, N., & Goldman, N. (2024) · Molecular Biology and Evolution

Genomics and Phylogenetic StudiesEvolution and Genetic Dynamics

Cited by 1