Gene expression activity and pathway selection for sucrose metabolism in developing storage root of sweet potato
Abstract
Development of sweet potato (Ipomoea batatas) storage root coincides with starch accumulation made using cleaved products of imported photoassimilate sucrose. The genes and pathways are predominantly active for sucrose metabolism in developing storage root were unknown. In this study, we used both an expressed sequence tag (EST) approach and a reverse transcription-polymerase chain reaction (RT-PCR) approach to answer this question. Sucrose synthase (SuSy) was found to be significantly more frequent in storage root ESTs than in fibrous root ESTs. SuSy was the most abundant carbohydrate-metabolism gene in the storage-root ESTs. RT-PCR results confirmed this by showing that invertase was active in fibrous roots but rapidly decreased to an undetectable level during storage root development while SuSy became predominant. Invertase expression was also detectable in young immature storage root and shoot tips, suggesting an involvement in cell formation. SuSy expression pattern showed considerable similarity to that of ADP-glucose pyrophosphorylase, an essential enzyme for starch synthesis. The results indicated that (i). SuSy was the most actively expressed enzyme in sucrose metabolism in developing storage root and was correlated with sink strength, and (ii). whereas invertase was active at cell formation stages, SuSy pathway was predominant for sucrose cleavage related to starch-accumulation.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The dry matter content (ranging from 18 to 42%) and starch content of storage roots varies greatly among sweet potato genotypes.
“Furthermore, the dry matter content (ranging from 18 to 42%) and starch content of the SRs varies greatly among sweet potato genotypes (Li and Zhang, 2003; Ravi et al., 2009; Tumwegamire et al., 2011)”
From Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato (2017) · cites this paper as Li and Zhang, 2003
In storage roots, starch is synthesized from the cleaved products of imported photoassimilate sucrose from photosynthetic organs.
“In SRs, starch is synthesized from the cleaved products of imported photoassimilate sucrose from photosynthetic organs (Li and Zhang, 2003).”
From Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato (2017) · cites this paper as Li and Zhang, 2003
Starch is synthesized in plant storage organs using the cleaved products of sucrose, which is the main photoassimilate from photosynthetic organs.
“Starch is synthesized in plant storage organs using the cleaved products of sucrose, which is the main photoassimilate from photosynthetic organs (Li and Zhang, 2003).”
From Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato (2017) · cites this paper as Li and Zhang, 2003
The SuSy pathway was shown to be the predominant pathway underlying sucrose cleavage related to starch accumulation in sweet potato.
“The SuSy pathway was shown to be the predominant pathway underlying sucrose cleavage related to starch accumulation in sweet potato (Li and Zhang, 2003).”
From Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato (2017) · cites this paper as Li and Zhang, 2003
Two pathways mediate sucrose cleavage in the cytosol; in one, sucrose is converted to glucose and fructose by invertase, and in the other, sucrose is converted to UDP-glucose and fructose by SuSy, and the UDP-glucose is then converted to glucose-1-phosphate by UGPase.
“Two pathways mediate sucrose cleavage in the cytosol; in one, sucrose is converted to glucose and fructose by invertase, and in the other, sucrose is converted to UDP-glucose and fructose by SuSy (Li and Zhang, 2003; Wind et al., 2010), and the UDP-glucose is then converted to glucose-1-phosphate by UGPase, for use in subsequent reactions related to starch synthesis (Figure S2; Li and Zhang, 2003;”
From Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato (2017) · cites this paper as Li and Zhang, 2003
In sweet potato storage roots, starch is mainly synthesized from sucrose produced from photosynthesis.
“In sweet potato storage roots, starch is mainly synthesized from sucrose that is produced from photosynthesis [25].”
From RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.) (2019) · cites this paper as [25]
Cites
Sequence identification of 2,375 human brain genes
Adams, M. D., Dubnick, M., Kerlavage, A. R., Moreno, R., Kelley, J. M., Utterback, T. R., Nagle, J. W., Fields, C., & Venter, J. C. (1992) · Nature · doi:10.1038/355632a0 · Cited by 754 · see citing works
Amplification and analysis of DNA sequences in single human sperm and diploid cells
Li, H., Gyllensten, U. B., Cui, X., Saiki, R. K., Erlich, H. A., & Arnheim, N. (1988) · Nature · doi:10.1038/335414a0 · Cited by 664 · see citing works
Regulation of the Amount of Starch in Plant Tissues by ADP Glucose Pyrophosphorylase
Stark, D. M., Timmerman, K. P., Barry, G. F., Preiss, J., & Kishore, G. M. (1992) · Science · doi:10.1126/science.258.5080.287 · Cited by 652 · see citing works
Zrenner, R. M., Salanoubat, M., Willmitzer, L., & Sonnewald, U. (1995) · The Plant Journal · doi:10.1046/j.1365-313x.1995.07010097.x · Cited by 536 · see citing works
Müller‐Röber, B., Sonnewald, U., & Willmitzer, L. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05167.x · Cited by 501 · see citing works
Molecular and Biochemical Triggers of Potato Tuber Development
Fernie, A. R., & Willmitzer, L. (2001) · PLANT PHYSIOLOGY · doi:10.1104/pp.010764 · Cited by 359 · see citing works
Sucrose Synthase, Starch Accumulation, and Tomato Fruit Sink Strength
Wang, F., Sanz, A., Brenner, M. L., et al. (1993) · PLANT PHYSIOLOGY · doi:10.1104/pp.101.1.321 · Cited by 295 · see citing works
Sucrose to starch: a transition in molecular plant physiology.
Fernie, A. (2002) · Trends in Plant Science · doi:10.1016/s1360-1385(01)02183-5 · Cited by 166 · see citing works
A potato molecular-function map for carbohydrate metabolism and transport
Chen, X., Salamini, F., & Gebhardt, C. (2001) · Theoretical and Applied Genetics · doi:10.1007/s001220051645 · Cited by 160 · see citing works
Vasmatzis, G., Essand, M., Brinkmann, U., et al. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.1.300 · Cited by 151 · see citing works
Hajirezaei, M., Takahata, Y., Trethewey, R. N., Willmitzer, L., & Sonnewald, U. (2000) · Journal of Experimental Botany · doi:10.1093/jexbot/51.suppl_1.439 · Cited by 99 · see citing works
Sucrose‐cleaving enzymes and carbohydrate pools in Lilium longiflorum floral organs
Ranwala, A. P., & Miller, W. B. (1998) · Physiologia Plantarum · doi:10.1034/j.1399-3054.1998.1030413.x · Cited by 93 · see citing works
Analysis of gene expression in rose petals using expressed sequence tags
Channelière, S., Rivière, S., Scalliet, G., et al. (2002) · FEBS Letters · doi:10.1016/s0014-5793(02)02413-4 · Cited by 91 · see citing works
Osmotic stress‐induced changes of sucrose metabolism in cultured sweet potato cells
Wang, H. L., Lee, P., Chen, W., et al. (2000) · Journal of Experimental Botany · doi:10.1093/jexbot/51.353.1991 · Cited by 82 · see citing works
Growth, sucrose synthase, and invertase activities of developing Phaseolus vulgaris L. fruits
Sung, S.-J. S., SHEIH, W. J., Geiger, D. R., et al. (1994) · Plant Cell & Environment · doi:10.1111/j.1365-3040.1994.tb00310.x · Cited by 75 · see citing works
Florova, G., Kazanina, G., & Reynolds, K. A. (2002) · Biochemistry · doi:10.1021/bi0258804 · Cited by 74 · see citing works
Expression analysis of ESTs derived from the inner bark of Cryptomeria japonica
Ujino‐Ihara, T., Yoshimura, K., Ugawa, Y., Yoshimaru, H., Nagasaka, K., & Tsumura, Y. (2000) · Plant Molecular Biology · doi:10.1023/a:1006492103063 · Cited by 72 · see citing works
Chengappa, S., Guilleroux, M., Phillips, W., et al. (1999) · Plant Molecular Biology · doi:10.1023/a:1006136524725 · Cited by 64 · see citing works
Evaluation of 515 expressed sequence tags obtained from guard cells of Brassica campestris
Kwak, J. M., Kim, S. A., Hong, S. W., et al. (1997) · Planta · doi:10.1007/s004250050097 · Cited by 63 · see citing works
Tissue-specific expression of two genes for sucrose synthase in carrot (Daucus carota L.)
Sturm, A., Lienhard, S., Schatt, S., et al. (1999) · Plant Molecular Biology · doi:10.1023/a:1006199003756 · Cited by 60 · see citing works
The potato tuber transcriptome: analysis of 6077 expressed sequence tags
Crookshanks, M., Emmersen, J., Welinder, K. G., & Nielsen, K. L. (2001) · FEBS Letters · doi:10.1016/s0014-5793(01)02888-5 · Cited by 54 · see citing works
Cell-Specific Expression of Mitochondrial Transcripts in Maize Seedlings.
Li, X., Zhang, M., & Brown, G. G. (1996) · The Plant Cell · doi:10.1105/tpc.8.11.1961 · Cited by 54 · see citing works
Self-citationExpression analysis of a sucrose synthase gene from sugar beet (Beta vulgaris L.)
Hesse, H., & Willmitzer, L. (1996) · Plant Molecular Biology · doi:10.1007/bf00020799 · Cited by 53 · see citing works
Usuda, H., Demura, T., Shimogawara, K., et al. (1999) · Plant and Cell Physiology · doi:10.1093/oxfordjournals.pcp.a029552 · Cited by 39 · see citing works
Huang, Y. H., Picha, D. H., Kilili, A. W., & Johnson, C. E. (1999) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf9902191 · Cited by 32 · see citing works
Rhythmic growth and carbon allocation in Quercus robur. Sucrose metabolizing enzymes in leaves
Alaoui‐Sossé, B., Ricaud, S., Barnola, P., et al. (1996) · Physiologia Plantarum · doi:10.1111/j.1399-3054.1996.tb00241.x · Cited by 27 · see citing works
Appeldoorn, N. J. G., Sergeeva, L. I., Vreugdenhil, D., et al. (2002) · Physiologia Plantarum · doi:10.1034/j.1399-3054.2002.1150218.x · Cited by 27 · see citing works
Relationship between Acid Invertase Activity and Hexose Content in Sweet Potato Storage Roots
Takahata, Y., Noda, T., & Sato, T. (1996) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf960018m · Cited by 22 · see citing works
Tanaka, N., Yamakawa, M., & Yamashita, I. (1998) · Plant Science · doi:10.1016/s0168-9452(98)00123-x · Cited by 15 · see citing works
Yu, H., Moon, M.-S., Lee, H., et al. (1999) · Molecules and Cells · doi:10.1016/s1016-8478(23)13538-2 · Cited by 15 · see citing works
Yatomi, M., Kubota, F., Saito, K., & Agata, W. (1996) · Journal of Agronomy and Crop Science · doi:10.1111/j.1439-037x.1996.tb00587.x · Cited by 13 · see citing works
Expression of Sucrose Synthase in Sweet Potato.
Saitou, K., ARAKI, T., AGATA, W., Kubota, F., & Nakayama, K. (1997) · Japanese Journal of Crop Science · doi:10.1626/jcs.66.624 · Cited by 10 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Dong, T., Zhu, M., Yu, J., Han, R., Tang, C., Xu, T., Liu, J., & Li, Z. (2019) · BMC Plant Biology · doi:10.1186/s12870-019-1731-0 · Cited by 109 · see citing works
Tanaka, M., Takahata, Y., Nakayama, H., Nakatani, M., & Tahara, M. (2009) · Planta · doi:10.1007/s00425-009-0979-2 · Cited by 106 · see citing works
Zhang, K., Wu, Z., Tang, D., Luo, K., Lu, H., Liu, Y., Dong, J., Wang, X., Lv, C., Wang, J., et al. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.00914 · Cited by 88 · see citing works
Molecular Regulation of Storage Root Formation and Development in Sweet Potato
Ravi, V., Chakrabarti, S. K., Makeshkumar, T., & Saravanan, R. (2014) · Horticultural Reviews: Volume 42 · doi:10.1002/9781118916827.ch03 · Cited by 53 · see citing works
Kim, S.-H., Hamada, T., Otani, M., & Shimada, T. (2005) · Journal of Plant Biology · doi:10.1007/bf03030580 · Cited by 34 · see citing works
- Authors
- Li, X.-Q., & Zhang, D.
- Affiliations
- Agriculture and Agri-Food Canada (CA)
- International Potato Center (PE)
- Venue
- Plant and Cell Physiology
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-06-15
- Volume
- 44
- Issue
- 6
- Pages
- 630-636
- ISSN
- 0032-0781 (ISSN-L)
- 1471-9053
- OpenAlex
- W2161904346
- Cited by
- 89
- References
- 32
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 11 · 2023: 6 · 2022: 2 · 2021: 5 · 2020: 5 · 2019: 8 · 2018: 6 · 2017: 5 · 2016: 7 · 2015: 4 · 2014: 3 · 2013: 3 · 2012: 3
- FWCI
- 2.75
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Plant and Cell Physiology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Agriculture and Agri-Food Canada
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant nutrient uptake and metabolism
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Postharvest Quality and Shelf Life Management
- Keywords
- Ipomoea batatas, storage root development, sucrose metabolism, sucrose synthase, invertase, ADP-glucose pyrophosphorylase, starch accumulation, gene expression, expressed sequence tags, sink strength, fibrous roots, cell formation
- MeSH terms
- Base Sequence, Cell Differentiation, Glucosyltransferases, Glycoside Hydrolases, Molecular Sequence Data, Nucleotidyltransferases, RNA, Messenger, Starch, Sucrose, Genomic Library, Gene Expression Regulation, Enzymologic, DNA, Complementary, Gene Expression Regulation, Plant, Plant Roots, Plant Shoots, Genome, Plant, Ipomoea, beta-Fructofuranosidase, Glucose-1-Phosphate Adenylyltransferase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review