The DOI matches its Crossref record; 88 of the 88 references it cites were found in a registry or an index.
Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification
Abstract
Geographic characters--traits describing the spatial distribution of a species-may both affect and be affected by processes associated with lineage birth and death. This is potentially confounding to comparative analyses of species distributions because current models do not allow reciprocal interactions between the evolution of ranges and the growth of phylogenetic trees. Here, we introduce a likelihood-based approach to estimating region-dependent rates of speciation, extinction, and range evolution from a phylogeny, using a new model in which these processes are interdependent. We demonstrate the method with simulation tests that accurately recover parameters relating to the mode of speciation and source-sink dynamics. We then apply it to the evolution of habitat occupancy in Californian plant communities, where we find higher rates of speciation in chaparral than in forests and evidence for expanding habitat tolerances.
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Cites
R: A Language and Environment for Statistical Computing
R Core Team (2025) · doi:10.32614/r.manuals · Cited by 352,181
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
BEAST: Bayesian evolutionary analysis by sampling trees
Drummond, A. J., & Rambaut, A. (2007) · BMC Evolutionary Biology · doi:10.1186/1471-2148-7-214 · Cited by 12,919
Kass, R. E., & Raftery, A. E. (1995) · Journal of the American Statistical Association · doi:10.1080/01621459.1995.10476572 · Cited by 12,558
Relaxed Phylogenetics and Dating with Confidence
Drummond, A. J., Ho, S. Y. W., Phillips, M. J., & Rambaut, A. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040088 · Cited by 6,463 · cited 1×
“Phylogenies were constructed with the Bayesian MCMC method implemented in BEAST (Drummond and Rambaut 2007), using a lognormally distributed relaxed molecular clock model (Drummond et al. 2006) and a birth–death prior.”
MethodModel Selection and Multimodel Inference
(2003) · Technometrics · doi:10.1198/tech.2003.s146 · Cited by 5,449
Inferring the historical patterns of biological evolution
Pagel, M. (1999) · Nature · doi:10.1038/44766 · Cited by 5,200
Species diversity in space and time
(1996) · Choice Reviews Online · doi:10.5860/choice.33-2720 · Cited by 4,573
Species Diversity in Space and Time
Rosenzweig, M. L. (1995) · doi:10.1017/cbo9780511623387 · Cited by 3,690 · cited 1×
“Increases in range size may have a variety of effects on speciation rates (Rosenzweig 1995; Chown 1997; Gaston and Chown 1999).”
BackgroundPunctuated equilibria: an alternative to phyletic gradualism
Eldredge, N., Gould, S. J., & Schöpf, T. J. M. (1972) · Cited by 3,257
Cited by
Borneo and Indochina are Major Evolutionary Hotspots for Southeast Asian Biodiversity
de Bruyn, M., Stelbrink, B., Morley, R. J., Hall, R., Carvalho, G. R., Cannon, C. H., van den Bergh, G., Meijaard, E., Metcalfe, I., Boitani, L., et al. (2014) · Systematic Biology · doi:10.1093/sysbio/syu047 · Cited by 425
Evolutionary inferences from phylogenies: a review of methods
O'Meara, B. C. (2012) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-110411-160331 · Cited by 268
Pennell, M. W., & Harmon, L. J. (2013) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.12157 · Cited by 255
Metadata
- Authors
- Goldberg, E. E., Lancaster, L. T., & Ree, R. H.
- Venue
- Systematic Biology
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-05-05
- Volume
- 60
- Issue
- 4
- Pages
- 451-465
- ISSN
- 1063-5157 (ISSN-L)
- 1076-836X
- OpenAlex
- W2111884880
- Cited by
- 425
- References
- 88
- FWCI
- 17.87
- Type
- journal article
- Language
- en
- Open access
- closed
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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