The DOI matches its Crossref record; 28 of the 28 references it cites were found in a registry or an index.
More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs
Open accessAbstract
We present the first genomic-scale analysis addressing the phylogenetic position of turtles, using over 1000 loci from representatives of all major reptile lineages including tuatara. Previously, studies of morphological traits positioned turtles either at the base of the reptile tree or with lizards, snakes and tuatara (lepidosaurs), whereas molecular analyses typically allied turtles with crocodiles and birds (archosaurs). A recent analysis of shared microRNA families found that turtles are more closely related to lepidosaurs. To test this hypothesis with data from many single-copy nuclear loci dispersed throughout the genome, we used sequence capture, high-throughput sequencing and published genomes to obtain sequences from 1145 ultraconserved elements (UCEs) and their variable flanking DNA. The resulting phylogeny provides overwhelming support for the hypothesis that turtles evolved from a common ancestor of birds and crocodilians, rejecting the hypothesized relationship between turtles and lepidosaurs.
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Cites
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE
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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
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Ultraconserved Elements in the Human Genome
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Self-citationCoalescent methods for estimating phylogenetic trees
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Cited by
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
Pyron, R., Burbrink, F. T., & Wiens, J. J. (2013) · BMC Evolutionary Biology · doi:10.1186/1471-2148-13-93 · Cited by 1,641
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St. John, J. A., Capella-Gutiérrez, S., Castoe, T. A., et al. (2014) · Science · doi:10.1126/science.1254449 · Cited by 359
Self-citationFaircloth, B. C., Branstetter, M. G., White, N. D., & Brady, S. G. (2015) · Molecular Ecology Resources · doi:10.1111/1755-0998.12328 · Cited by 334
Self-citationBranstetter, M. G., Longino, J. T., Ward, P. S., & Faircloth, B. C. (2017) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.12742 · Cited by 308
Self-citationPhylotranscriptomic consolidation of the jawed vertebrate timetree
Irisarri, I., Baurain, D., Brinkmann, H., Delsuc, F., Sire, J.-Y., Kupfer, A., Petersen, J., Jarek, M., Meyer, A., Vences, M., et al. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0240-5 · Cited by 299
“(iii) Turtles were the sister group of crocodiles and birds (Archosauria), in agreement with the majority of previous phylogenomic studies10,11 and the latest morphological evidence36.”
Metadata
- Authors
- Crawford, N. G., Faircloth, B. C., McCormack, J. E., Brumfield, R. T., Winker, K., & Glenn, T. C.
- Venue
- Biology Letters
- Publisher
- The Royal Society
- Published
- 2012-05-16
- Volume
- 8
- Issue
- 5
- Pages
- 783-786
- ISSN
- 1744-9561 (ISSN-L)
- 1744-957X
- OpenAlex
- W2128081828
- Cited by
- 357
- References
- 28
- FWCI
- 14.75
- Type
- journal article
- Language
- en
- Open access
- green
- Licence
- royalsociety.org/journals/ethics-policies/data-sharing-mining/ (tdm)
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