Cited by 17Forensic and Genetic ResearchGenetic diversity and population structurePleistocene-Era Hominins and Archaeology

Comparing maternal genetic variation across two millennia reveals the demographic history of an ancient human population in southwest Turkey

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Ottoni, Claudio, Rasteiro, Rita, Willet, Rinse, Claeys, Johan, Talloen, Peter, Van de Vijver, Katrien, Chikhi, Lounès, Poblome, Jeroen +1 more·2016·Royal Society Open Science

Abstract

More than two decades of archaeological research at the site of Sagalassos, in southwest Turkey, resulted in the study of the former urban settlement in all its features. Originally settled in late Classical/early Hellenistic times, possibly from the later fifth century BCE onwards, the city of Sagalassos and its surrounding territory saw empires come and go. The Plague of Justinian in the sixth century CE, which is considered to have caused the death of up to a third of the population in Anatolia, and an earthquake in the seventh century CE, which is attested to have devastated many monuments in the city, may have severely affected the contemporary Sagalassos community. Human occupation continued, however, and Byzantine Sagalassos was eventually abandoned around 1200 CE. In order to investigate whether these historical events resulted in demographic changes across time, we compared the mitochondrial DNA variation of two population samples from Sagalassos (Roman and Middle Byzantine) and a modern sample from the nearby town of Ağlasun. Our analyses revealed no genetic discontinuity across two millennia in the region and Bayesian coalescence-based simulations indicated that a major population decline in the area coincided with the final abandonment of Sagalassos, rather than with the Plague of Justinian or the mentioned earthquake.

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  • Comparative data from a contemporary population under Roman rule in Asia Minor did not reveal a closer relationship to the ancient Egyptians from the Roman period.

    “However, comparative data from a contemporary population under Roman rule in Asia Minor, from the Roman city Ağlasun today in Turkey31, did not reveal a closer relationship to the ancient Egyptians from the Roman period (Fig. 3b,c).”

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  1. [1]Brandt G et al. 2013 Ancient DNA reveals key stages in the formation of Central European mitochondrial genetic diversity. Science 342, 257– 261. (doi:10.1126/science.1241844) 24115443 PMC4039305 · DOI · Paper page
  2. [2]Rasteiro R, Chikhi L 2013 Female and male perspectives on the Neolithic transition in Europe: clues from ancient and modern genetic data. PLoS ONE. 8, e60944 (doi:10.1371/journal.pone.0060944) 23613761 PMC3629215 · DOI
  3. [3]Ghirotto S et al. 2013 Origins and evolution of the Etruscans’ mtDNA. PLoS ONE 8, e55519 (doi:10.1371/journal.pone.0055519) 23405165 PMC3566088 · DOI
  4. [4]Vai S et al. 2015 Genealogical relationships between early medieval and modern inhabitants of Piedmont. PLoS ONE 10, e0116801 (doi:10.1371/journal.pone.0116801) 25635682 PMC4312042 · DOI
  5. [5]Poblome J 2014 Exempli gratia: Sagalassos, Marc Waelkens and interdisciplinary archaeology. Leuven, Belgium: Leuven University Press.
  6. [8]Arndt A, Van Neer W, Hellemans B, Robben J, Volckaert F, Waelkens M. 2003 Roman trade relationships at Sagalassos (Turkey) elucidated by ancient DNA of fish remains. J. Archaeol. Sci. 30, 1095– 1105. (doi:10.1016/s0305-4403(02)00204-2) · DOI
  7. [9]Wagner DM et al. 2014 Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis. Lancet Infect. Dis. 14, 319– 326. (doi:10.1016/S1473-3099(13)70323-2) 24480148 · DOI
  8. [10]Allen P. 1979 The Justinian Plague. Byzantion 49, 5– 20. 17252657
  9. [11]Waelkens M, Sintubin M, Muchez P, Paulissen E. 2000 Archaeological, geomorphological and geological evidence for a major earthquake at Sagalassos (SW Turkey) around the middle of the seventh century AD. Geol. Soc. Lond. Spec. Publ. 171, 373– 383. (doi:10.1144/gsl.sp.2000.171.01.27) · DOI
  10. [12]Poblome J 2014 Shifiting societal complexity in Byzantine Asia Minor and Dark Age pottery. In LRCW 4 - archaeology and archaeometry. The Mediterranean: a market without frontiers (eds N Poulou-Papadimitriou, E Nodarou, V KilikoGlou), pp. 623–642 Oxford, UK: Archaeopress.
  11. [13]Vanhaverbeke H, Başağaç Ö, Paul K. 2005 A Selçuk Hamam at Ağlasun (Burdur province). Turcica 37, 309– 336. (doi:10.2143/TURC.37.0.2011709) · DOI
  12. [14]Ottoni C, Ricaut FX, Vanderheyden N, Brucato N, Waelkens M, Decorte R. 2011 Mitochondrial analysis of a Byzantine population reveals the differential impact of multiple historical events in South Anatolia. Eur. J. Hum. Genet. 19, 571– 576. (doi:10.1038/ejhg.2010.230) 21224890 PMC3083616 · DOI
  13. [15]Jehaes E 1998 Optimization of methods and procedures for the analysis of mtDNA sequences and their applications in molecular archaeological and historical finds. Leuven, Belgium: Leuven University Press.
  14. [16]Excoffier L, Lischer HEL 2010 Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10, 564– 567. (doi:10.1111/j.1755-0998.2010.02847.x) 21565059 · DOI
  15. [17]Bandelt HJ, Forster P, Rohl A. 1999 Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16, 37– 48. (doi:10.1093/oxfordjournals.molbev.a026036) 10331250 · DOI · Paper page
  16. [18]Beaumont M 2008 Joint determination of topology, divergence time and immigration in population trees. In Simulation, genetics and human prehistory (eds S Matsumura, P Forster, C Renfrew), pp. 135– 154. Cambridge, UK: McDonald Institute for Archaeological Research.
  17. [19]Beaumont MA, Zhang W, Balding DJ 2002 Approximate Bayesian computation in population genetics. Genetics 162, 2025– 2035. 12524368 PMC1462356
  18. [20]Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA 2005 Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 21, 1733– 1734. (doi:10.1093/bioinformatics/bti154) 15564305 · DOI
  19. [21]Excoffier L, Novembre J, Schneider S 2000 SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography. J. Hered. 91, 506– 509. (doi:10.1093/jhered/91.6.506) 11218093 · DOI
  20. [22]Csilléry K, François O, Blum MGB 2012 abc: an R package for approximate Bayesian computation (ABC). Methods Ecol. Evol. 3, 475– 479. (doi:10.1111/j.2041-210X.2011.00179.x) · DOI
  21. [23]Paschou P et al. 2014 Maritime route of colonization of Europe. Proc. Natl Acad. Sci. USA 111, 9211– 9216. (doi:10.1073/pnas.1320811111) 24927591 PMC4078858 · DOI
  22. [24]Hughey JR, Paschou P, Drineas P, Mastropaolo D, Lotakis DM, Navas PA, Michalodimitrakis M, Stamatoyannopoulos JA, Stamatoyannopoulos G 2013 A European population in Minoan Bronze Age Crete. Nat Commun. 4, 1861 (doi:10.1038/ncomms2871) 23673646 PMC3674256 · DOI
  23. [25]Poblome J, Viaene W, Kucha H, Waelkens M, Laduron D, Depuydt F 1997 The clay raw materials of Sagalassos Red Slip ware - a chronological evaluation. In Sagalassos IV (eds M Waelkens, J Poblome), pp. 507– 518. Leuven, Belgium: Leuven University Press.
  24. [26]Quintana-Murci L et al. 2004 Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor. Am. J. Hum. Genet. 74, 827– 845. (doi:10.1086/383236) 15077202 PMC1181978 · DOI

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Authors
Ottoni, C., Rasteiro, R., Willet, R., Claeys, J., Talloen, P., Van de Vijver, K., Chikhi, L., Poblome, J., & Decorte, R.
Affiliations
  • Universitair Ziekenhuis Leuven (BE)
  • University of Leicester (GB)
  • Leiden University (NL)
  • KU Leuven (BE)
  • Center for Archaeological Sciences, University of Leuven, Leuven, Belgium
  • Centre National de la Recherche Scientifique (FR)
Corresponding author
Ottoni, Claudio
Venue
Royal Society Open Science
Published
2016-02
Volume
3
Issue
2
Pages
150250
ISSN
2054-5703 (ISSN-L)
OpenAlex
W2285810044
Cited by
17
References
0
Citations by year
2026: 1 · 2024: 1 · 2023: 2 · 2022: 1 · 2021: 3 · 2020: 2 · 2018: 4 · 2017: 1 · 2016: 2
FWCI
1.89
Type
journal article
Language
en
Open access
Locations
  • Royal Society Open Science (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Bristol Research (University of Bristol) (publishedVersion, cc-by)
  • Explore Bristol Research (publishedVersion, cc-by)
  • IRIS Research product catalog (Sapienza University of Rome) (submittedVersion, cc-by)
  • Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) (submittedVersion, other-oa)
  • Cineca Institutional Research Information System (Tor Vergata University) (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Figshare (submittedVersion, cc-by)
  • Lirias (KU Leuven) (submittedVersion)
  • Leicester Research Archive (University of Leicester) (submittedVersion, cc-by)
Funders
  • Belgian Programme on Interuniversity Poles of Attraction (IAP 07/09)
  • University of Leuven (GOA 13/04)
  • KU Leuven BOF Centre of Excellence Financing
  • Research Foundation Flanders (G. 0637.15, G.0562.11)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
  • Social Sciences › Anthropology › Pleistocene-Era Hominins and Archaeology
Keywords
Sagalassos, mitochondrial DNA, ancient human populations, demographic history, Justinianic Plague, population decline, urban abandonment, Anatolia, population continuity

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