Clostridium lavalense sp. nov., a glycopeptide-resistant species isolated from human faeces

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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Diversity of the Human Intestinal Microbial Flora

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Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology

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Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

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Host-Bacterial Mutualism in the Human Intestine

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MOLECULAR BIOLOGY AND EVOLUTION

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Taxonomic parameters revisited : tarnished gold standards

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The Phylogeny of the Genus Clostridium: Proposal of Five New Genera and Eleven New Species Combinations

Collins, M. D., Lawson, P. A., Willems, A. L., Córdoba, J. J., Fernández‐Garayzábal, J. F., GARCIA, P., Cai, J., Hippe, H., & Farrow, J. A. E. (1994) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-44-4-812 · Cited by 1,670 · see citing works

H OW H OST -M ICROBIAL I NTERACTIONS S HAPE THE N UTRIENT E NVIRONMENT OF THE M AMMALIAN I NTESTINE

Hooper, L. V., Midtvedt, T., & Gordon, J. I. (2002) · Annual Review of Nutrition · doi:10.1146/annurev.nutr.22.011602.092259 · Cited by 1,623 · see citing works

Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut

Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D., & Doré, J. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.11.4799-4807.1999 · Cited by 1,490 · see citing works

A microbial world within us

Zoetendal, E. G., Vaughan, E. E., & de Vos, W. M. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05056.x · Cited by 390 · see citing works

Enterococcal vanB resistance locus in anaerobic bacteria in human faeces

Stinear, T. P., Olden, D., Johnson, P. D. R., Davies, J. K., & Grayson, M. L. (2001) · The Lancet · doi:10.1016/s0140-6736(00)04206-9 · Cited by 127 · see citing works

Phylogeny of the Enterobacteriaceae based on genes encoding elongation factor Tu and F-ATPase β-subunit

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Molecular Characterization of vanB Elements in Naturally Occurring Gut Anaerobes

Ballard, S. A., Pertile, K. K., Lim, M., Johnson, P. D. R., & Grayson, M. L. (2005) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.49.5.1688-1694.2005 · Cited by 103 · see citing works

Clostridium bolteae sp. nov., Isolated from Human Sources

Song, Y., Liu, C., Molitoris, D. R., Tomzynski, T. J., Lawson, P. A., Collins, M. D., & Finegold, S. M. (2003) · Systematic and Applied Microbiology · doi:10.1078/072320203322337353 · Cited by 103 · see citing works

Propionibacterium australiense sp. nov. Derived from Granulomatous Bovine Lesions

Bernard, K. A., Shuttleworth, L. A., Munro, C. K., Forbes-Faulkner, J. C., PITT, D., NORTON, J., & Thomas, A. D. (2002) · Anaerobe · doi:10.1006/anae.2000.0408 · Cited by 61 · see citing works

Characterization of a Tn5382-like transposon containing the vanB2 gene cluster in a Clostridium strain isolated from human faeces

Domingo, M.-C., Huletsky, A., Bernal, A., Giroux, R., Boudreau, D. K., Picard, F. J., & Bergeron, M. G. (2005) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/dki029 · Cited by 43 · see citing works

Clostridium asparagiforme sp. nov., isolated from a human faecal sample

Mohan, R., Namsolleck, P., Lawson, P. A., Osterhoff, M. A., Collins, M. D., Alpert, C.-A., & Blaut, M. (2005) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2005.11.001 · Cited by 40 · see citing works

A genomic update on clostridial phylogeny: G ram‐negative spore formers and other misplaced clostridia

Yutin, N., & Galperin, M. Y. (2013) · Environmental Microbiology · doi:10.1111/1462-2920.12173 · Cited by 569 · see citing works

Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa

Haas, K. N., & Blanchard, J. L. (2019) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.003698 · Cited by 118 · see citing works

The Plasmidome of Firmicutes: Impact on the Emergence and the Spread of Resistance to Antimicrobials

Lanza, V. F., Tedim, A. P., Martínez, J. L., Baquero, F., & Coque, T. M. (2015) · Microbiology Spectrum · doi:10.1128/microbiolspec.plas-0039-2014 · Cited by 116 · see citing works

Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood

Amir, I., Bouvet, P., Legeay, C., Gophna, U., & Weinberger, A. (2013) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.057331-0 · Cited by 78 · see citing works

Hungatella effluvii gen. nov., sp. nov., an obligately anaerobic bacterium isolated from an effluent treatment plant, and reclassification of Clostridium hathewayi as Hungatella hathewayi gen. nov., comb. nov.

Kaur, S., Yawar, M., Kumar, P. A., & Suresh, K. N. (2013) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.056986-0 · Cited by 76 · see citing works

Comparative Metagenome-Assembled Genome Analysis of “Candidatus Lachnocurva vaginae”, Formerly Known as Bacterial Vaginosis-Associated Bacterium−1 (BVAB1)

Holm, J. B., France, M., Ma, B., McComb, E. J., Robinson, C. K., Mehta, A., Tallon, L. J., Brotman, R. M., & Ravel, J. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00117 · Cited by 62 · see citing works

Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin-supplemented diet in germ-free mice

Wang, J., Wang, J., Pang, X., Zhao, L., Tian, L., & Wang, X. (2016) · Scientific Reports · doi:10.1038/srep36137 · Cited by 59 · see citing works

Microbial Changes and Host Response in F344 Rat Colon Depending on Sex and Age Following a High-Fat Diet

Lee, S. M., Kim, N., Yoon, H., Nam, R. H., & Lee, D. H. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02236 · Cited by 47 · see citing works

Isolation of Clostridium from Yunnan-Tibet hot springs and description of Clostridium thermarum sp. nov. with lignocellulosic ethanol production

Liu, L., Jiao, J., Fang, B., Lv, A.-P., Ming, Y.-Z., Li, M.-M., Salam, N., & Li, W. (2020) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2020.126104 · Cited by 35 · see citing works

Update on Accepted Novel Bacterial Isolates Derived from Human Clinical Specimens and Taxonomic Revisions Published in 2020 and 2021

Munson, E. L., & Carroll, K. C. (2022) · Journal of Clinical Microbiology · doi:10.1128/jcm.00282-22 · Cited by 30 · see citing works

Improvement of a disk diffusion method for antibiotic susceptibility testing of anaerobic bacteria. French recommendations revisited for 2020

Dubreuil, L. J., Jehl, F., Cattoen, C., Bonnet, R., Bru, J. P., Caron, F., Cattoir, V., Courvalin, P. M., Jarlier, V., Lina, G., et al. (2020) · Anaerobe · doi:10.1016/j.anaerobe.2020.102213 · Cited by 28 · see citing works

Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis

Wang, Z., Guo, M., Li, J., Jiang, C., Yang, S., Zheng, S., Li, M., Ai, X., Xu, X., Zhang, W., et al. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.00829-23 · Cited by 24 · see citing works

Clostridium celerecrescens, often misidentified as “Clostridium clostridioforme group,” is involved in rare human infection cases

Bouvet, P., K'ouas, G., Coustumier, A. L., & Popoff, M. R. (2012) · Diagnostic Microbiology and Infectious Disease · doi:10.1016/j.diagmicrobio.2012.06.024 · Cited by 16 · see citing works

Lactiplantibacillus plantarum N4 ameliorates lipid metabolism and gut microbiota structure in high fat diet-fed rats

Deng, M., Zhang, S., Wu, S., Jiang, Q., Teng, W., Luo, T., Ouyang, Y., Liu, J., & Gu, B. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1390293 · Cited by 15 · see citing works

Fusimonas intestini gen. nov., sp. nov., a novel intestinal bacterium of the family Lachnospiraceae associated with diabetes in mice

Kusada, H., Kameyama, K., Meng, X., Kamagata, Y., & Tamaki, H. (2017) · Scientific Reports · doi:10.1038/s41598-017-18122-2 · Cited by 13 · see citing works

First isolation of Clostridium indolis in a patient with chronic osteitis: a case report and literature review of human infections related to Clostridium saccharolyticum group species

Lotte, R., Lotte, L., Bouvet, P., Degand, N., Bal, A., Carlès, M., de Dompsure, R. B., Popoff, M. R., & Ruimy, R. (2016) · Anaerobe · doi:10.1016/j.anaerobe.2016.08.001 · Cited by 9 · see citing works

Impact of Baizhu, Daqingye, and Hehuanhua extracts on the human gut microbiome

Lemons, J. M. S., Narrowe, A. B., Liu, L., Firrman, J., Mahalak, K. K., den Abbeele, P. V., Baudot, A., Deyaert, S., Li, Y., & Yu, L. L. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1298392 · Cited by 8 · see citing works

The Plasmidome ofFirmicutes: Impact on the Emergence and the Spread of Resistance to Antimicrobials

Lanza, V. F., Tedim, A. P., Martínez, J. L., Baquero, F., & Coque, T. M. (2015) · ASM Press eBooks · doi:10.1128/9781555818982.ch21 · Cited by 7 · see citing works

Clostridium indicum sp. nov., a novel anaerobic bacterium isolated from the sludge of an industrial effluent

Gundawar, K., Kumari, S., Sharma, S., Grover, V., Patil, P. B., & Korpole, S. (2019) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.003199 · Cited by 6 · see citing works

Summer dynamics of cyanobacteria in an oligo-mesotrophic temperate lake in Northwest Ireland

Garland, D., Lucy, F., & Touzet, N. (2023) · Hydrobiologia · doi:10.1007/s10750-023-05307-2 · Cited by 3 · see citing works

THE ROLE OF BACTERIAL AND ARCHAEA IN DETERMINING THE METABOLIC PATHWAY OF BIOGAS FERMENTATION AT LOW TEMPERATURES

Budianto, B., Feri, Z. O., & Yasin, R. E. (2024) · Acta Biológica Colombiana · doi:10.15446/abc.v29n1.106266 · Cited by 3 · see citing works

Bacterial Genotypic Drug Resistance Assays

Huletsky, A., & Bergeron, M. G. (2017) · Springer eBooks · doi:10.1007/978-3-319-47266-9_37 · Cited by 2 · see citing works

First Report ofClostridium lavalenseIsolated in Human Blood Cultures

Garceau, R., Bourque, C., Thibault, L., Côté, J., Longtin, J., & Domingo, M.-C. (2016) · Canadian Journal of Infectious Diseases and Medical Microbiology · doi:10.1155/2016/7231805 · Cited by 2 · see citing works

Co-infection of Clostridioides (Clostridium) difficile GMU1 and Bacillus cereus GMU2 in one patient in Guizhou, China

Hong, W., Cheng, Y., Rao, F., Yang, J., Cui, G., Chen, Z., Liao, J., Huang, X., Zhang, J., Wang, P., et al. (2018) · Anaerobe · doi:10.1016/j.anaerobe.2018.08.004 · Cited by 2 · see citing works

Detection of Vancomycin-Resistant Enterococci

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Clostridium weizhouense sp. nov., an anaerobic bacterium isolated from activated sludge of petroleum wastewater

Li, Q., Shen, T., Dong, Y., Liu, Y., Nong, J., Pan, J., Fu, B., & Xie, Q. (2022) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.005330 · Cited by 1 · see citing works

Faculty Opinions recommendation of Comparative Metagenome-Assembled Genome Analysis of "Candidatus Lachnocurva vaginae", Formerly Known as Bacterial Vaginosis-Associated Bacterium-1 (BVAB1).

Lamont, R. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.737763666.793579730

Taxonomic Abstract for the genera.

Parker, C. T., Osier, N. D., & Garrity, G. M. (2008) · The NamesforLife Abstracts · doi:10.1601/tx.3878

Exemplar Abstract for Clostridium lavalense Domingo et al. 2009, Lachnoclostridium lavalense (Domingo et al. 2009) Yutin and Galperin 2013 and Enterocloster lavalensis (Domingo et al. 2009) Haas and Blanchard 2020.

Parker, C. T., Mannor, K., & Garrity, G. M. (2009) · The NamesforLife Abstracts · doi:10.1601/ex.14135

Taxonomic Abstract for the species.

Parker, C. T., & Garrity, G. M. (2013) · The NamesforLife Abstracts · doi:10.1601/tx.14135

Nomenclature Abstract for Clostridium lavalense Domingo et al. 2009.

Parker, C. T., Wigley, S., & Garrity, G. M. (2009) · The NamesforLife Abstracts · doi:10.1601/nm.14135

An in vitro model of the small intestinal microbiota provides key insights into interindividual variability in structure and function

Firrman, J., Linshu, L. I. U., Mahalak, K. K., Lemons, J. M. S., Narrowe, A. B., Friedman, E. S., Wu, G. D., & de Weile, T. V. (2026) · mSystems · doi:10.1128/msystems.01373-25 · Cited by 1 · see citing works

Clostridium et entérocolite ulcéro-nécrosante du prématuré : étude comparative des espèces Clostridium butyricum et Clostridium neonatale

Schönherr-Hellec, S. (2017) · doi:10.70675/e404b5bdz72e8z4530z8638ze08f4b2f41f8

Ruminococcus gauvreauii sp. nov., a glycopeptide-resistant species isolated from a human faecal specimen

Domingo, M.-C., Huletsky, A., Boissinot, M., Bernard, K. A., Picard, F. J., & Bergeron, M. G. (2008) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.65259-0 · Cited by 72 · see citing works

Clostridium asparagiforme sp. nov., isolated from a human faecal sample

Mohan, R., Namsolleck, P., Lawson, P. A., Osterhoff, M. A., Collins, M. D., Alpert, C.-A., & Blaut, M. (2005) · Systematic and Applied Microbiology · doi:10.1016/j.syapm.2005.11.001 · Cited by 40 · see citing works

Anaerotruncus colihominis gen. nov., sp. nov., from human faeces

Lawson, P. A., Song, Y., Liu, C., Molitoris, D. R., Väisänen, M., Collins, M. D., & Finegold, S. M. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.02653-0 · Cited by 97 · see citing works

Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces

Takada, T., Kurakawa, T., Tsuji, H., & Nomoto, K. (2013) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.045823-0 · Cited by 130 · see citing works

Clostridium bartlettii sp. nov., isolated from human faeces

Song, Y., Liu, C. X., McTeague, M., Summanen, P. H., & Finegold, S. M. (2004) · Anaerobe · doi:10.1016/j.anaerobe.2004.04.004 · Cited by 57 · see citing works