Cited by 206Microbial Applications in Construction MaterialsBuilding materials and conservationCalcium Carbonate Crystallization and Inhibition

Bacteria-induced mineral precipitation: a mechanistic review

Open access
Hoffmann, Timothy D., Reeksting, Bianca J., Gebhard, Susanne·2021·Microbiology

Abstract

Micro-organisms contribute to Earth’s mineral deposits through a process known as bacteria-induced mineral precipitation (BIMP). It is a complex phenomenon that can occur as a result of a variety of physiological activities that influence the supersaturation state and nucleation catalysis of mineral precipitation in the environment. There is a good understanding of BIMP induced by bacterial metabolism through the control of metal redox states and enzyme-mediated reactions such as ureolysis. However, other forms of BIMP often cannot be attributed to a single pathway but rather appear to be a passive result of bacterial activity, where minerals form as a result of metabolic by-products and surface interactions within the surrounding environment. BIMP from such processes has formed the basis of many new innovative biotechnologies, such as soil consolidation, heavy metal remediation, restoration of historic buildings and even self-healing concrete. However, these applications to date have primarily incorporated BIMP-capable bacteria sampled from the environment, while detailed investigations of the underpinning mechanisms have been lagging behind. This review covers our current mechanistic understanding of bacterial activities that indirectly influence BIMP and highlights the complexity and connectivity between the different cellular and metabolic processes involved. Ultimately, detailed insights will facilitate the rational design of application-specific BIMP technologies and deepen our understanding of how bacteria are shaping our world.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1099/mic.0.001049

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The thick cell walls of Gram-positive bacteria have an enormous ion-binding capacity, with near equal contributions from peptidoglycan and teichoic acids.

    “Similarly, the thick cell walls of Gram-positive bacteria have an enormous ion-binding capacity,61 with near equal contributions from peptidoglycan and teichoic acids.62”

    From Metals in Motion: Understanding Labile Metal Pools in Bacteria (2025) · cites this paper as [62]

    The cell-surface section reports roughly equal contributions from teichoic-acid polyphosphate groups and peptidoglycan carboxyl groups, but specifically for calcium and magnesium binding in Gram-positive cell walls. Citation 62 supports that narrower finding, not an equal contribution to ion binding generally; the separate claim about enormous capacity is attached to citation 61. (LLM, conf=0.82)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 122

  1. [1]Zavarzin GA [Microbial geochemical calcium cycle] Mikrobiologiia 2002 71 1 17 10.1023/A:1017945329951 11910807 · DOI
  2. [2]Banks ED Taylor NM Gulley J Lubbers BR Giarrizo JG et al Bacterial calcium carbonate precipitation in cave environments: a function of calcium homeostasis Geomicrobiol J 2010 27 444 454 10.1080/01490450903485136 · DOI
  3. [3]Kaźmierczak J Fenchel T Kühl M Kempe S Kremer B et al Caco3 precipitation in multilayered cyanobacterial mats: clues to explain the alternation of micrite and sparite layers in calcareous stromatolites Life 2015 5 744 769 25761263 PMC4390877
  4. [6]Jonkers HM Self Healing Concrete: A Biological Approach van der Zwaag S editor Self Healing Materials: An Alternative Approach to 20 Centuries of Materials Science Dordrecht Springer Netherlands 2007 195 204
  5. [7]Sharma TK Alazhari M Heath A Paine K Cooper RM Alkaliphilic Bacillus species show potential application in concrete crack repair by virtue of rapid spore production and germination then extracellular calcite formation J Appl Microbiol 2017 122 1233 1244 10.1111/jam.13421 28199767 · DOI
  6. [8]Tan L Reeksting B Ferrandiz-Mas V Heath A Gebhard S et al Effect of carbonation on bacteria-based self-healing of cementitious composites Constr Build Mater 2020 257 119501 10.1016/j.conbuildmat.2020.119501 · DOI
  7. [9]Anbu P Kang C-H Shin Y-J So J-S Formations of calcium carbonate minerals by bacteria and its multiple applications Springerplus 2016 5 250 10.1186/s40064-016-1869-2 27026942 PMC4771655 · DOI
  8. [10]Arias D Cisternas L Rivas M Biomineralization mediated by ureolytic bacteria applied to water treatment: a review Crystals 2017 7 345
  9. [11]Dhami NK Reddy MS Mukherjee A Bacillus megaterium mediated mineralization of calcium carbonate as biogenic surface treatment of green building materials World J Microbiol Biotechnol 2013 29 2397 2406 10.1007/s11274-013-1408-z 23793943 · DOI
  10. [12]De Muynck W De Belie N Verstraete W Microbial carbonate precipitation in construction materials: a review Ecological Engineering 2010 36 118 136
  11. [13]Phillips AJ Gerlach R Lauchnor E Mitchell AC Cunningham AB et al Engineered applications of ureolytic biomineralization: a review Biofouling 2013 29 715 733 23802871
  12. [14]Zhu T Dittrich M Carbonate precipitation through microbial activities in natural environment, and their potential in biotechnology: a review Front Bioeng Biotechnol 2016 4 1 21 10.3389/fbioe.2016.00004 26835451 PMC4718973 · DOI
  13. [15]Bazylinski DA Frankel RB Konhauser KO Modes of biomineralization of magnetite by microbes Geomicrobiol J 2007 24 465 475 10.1080/01490450701572259 · DOI
  14. [16]Konhauser K Riding R Bacterial Biomineralization Fundamentals of Geobiology Chichester, UK John Wiley & Sons, Ltd 2012 105 130
  15. [17]Marvasi M Visscher PT Perito B Mastromei G Casillas-Martínez L Physiological requirements for carbonate precipitation during biofilm development of Bacillus subtilis etfA mutant FEMS Microbiol Ecol 2010 71 341 350 10.1111/j.1574-6941.2009.00805.x 20059546 · DOI
  16. [18]Baumgartner J Morin G Menguy N Perez Gonzalez T Widdrat M et al Magnetotactic bacteria form magnetite from a phosphate-rich ferric hydroxide via nanometric ferric (oxyhydr)oxide intermediates Proc Natl Acad Sci U S A 2013 110 14883 14888 10.1073/pnas.1307119110 23980143 PMC3773740 · DOI
  17. [19]Yamagishi A Tanaka M Lenders JJM Thiesbrummel J Sommerdijk NAJM et al Control of magnetite nanocrystal morphology in magnetotactic bacteria by regulation of mms7 gene expression Sci Rep 2016 6 1 11 10.1038/srep29785 27417732 PMC4945951 · DOI
  18. [21]Prozorov T Magnetic microbes: bacterial magnetite biomineralization Semin Cell Dev Biol 2015 46 36 43 10.1016/j.semcdb.2015.09.003 26382301 · DOI
  19. [22]Bazylinski DA Frankel RB Biologically controlled mineralization in prokaryotes Reviews in Mineralogy and Geochemistry 2003 54 217 247 10.2113/0540217 · DOI
  20. [23]Konhauser K Cell surface reactivity and metal sorption Introduction to Geomicrobiology Blackwell Oxford 2007
  21. [24]Dupraz C Reid RP Braissant O Decho AW Norman RS et al Processes of carbonate precipitation in modern microbial mats Earth-Science Reviews 2009 96 141 162 10.1016/j.earscirev.2008.10.005 · DOI
  22. [25]Benning LG Waychunas GA Nucleation, Growth, and Aggregation of Mineral Phases: Mechanisms and Kinetic Controls Brantley SL Kubicki JD White AF Kinetics of Water-Rock Interaction New York, NY Springer New York 2008 259 333
  23. [26]Cubillas P Anderson MW Synthesis Mechanism: Crystal Growth and Nucleation Čejka J Corma A Zones S Zeolites and Catalysis: Synthesis, Reactions and Applications Weinheim, Germany Wiley-VCH Verlag GmbH & Co. KGaA 2010 1 55
  24. [28]Reeder RJ Lamble GM Northrup PA XAFS study of the coordination and local relaxation around Co2+, Zn2+, Pb2+, and Ba2+ trace elements in calcite American Mineralogist 1999 84 1049 1060 10.2138/am-1999-7-807 · DOI · Paper page
  25. [31]Krajewska B Urease-aided calcium carbonate mineralization for engineering applications: a review J Adv Res 2018 13 59-67 10.1016/j.jare.2017.10.009 30094083 PMC6077181 · DOI
  26. [32]Reeksting BJ Hoffmann TD Tan L Paine K Gebhard S In-Depth profiling of calcite precipitation by environmental bacteria reveals fundamental mechanistic differences with relevance to application Appl Environ Microbiol 2020 86 e02739 19 10.1128/AEM.02739-19 31980427 PMC7082560 · DOI
  27. [33]Seifan M Berenjian A Microbially induced calcium carbonate precipitation: a widespread phenomenon in the biological world Appl Microbiol Biotechnol 2019 103 4693 4708 10.1007/s00253-019-09861-5 31076835 · DOI
  28. [34]Basnakova G Stephens ER Thaller MC Rossolini GM Macaskie LE The use of Escherichia coli bearing a phoN gene for the removal of uranium and nickel from aqueous flows Appl Microbiol Biotechnol 1998 50 266 272 10.1007/s002530051288 9763695 · DOI
  29. [35]Lauchnor EG Schultz LN Bugni S Mitchell AC Cunningham AB et al Bacterially induced calcium carbonate precipitation and strontium Coprecipitation in a porous media flow system Environ Sci Technol 2013 47 1557 1564 10.1021/es304240y 23282003 · DOI
  30. [36]Podda F Zuddas P Minacci A Pepi M Baldi F Heavy metal coprecipitation with hydrozincite [Zn5(CO3)2(OH)6] from mine waters caused by photosynthetic microorganisms Appl Environ Microbiol 2000 66 5092 5098 11055969 PMC92425
  31. [37]Beveridge TJ Fyfe WS Metal fixation by bacterial cell walls Can J Earth Sci 1985 22 1893 1898 10.1139/e85-204 · DOI
  32. [38]Douglas S Beveridge TJ Mineral formation by bacteria in natural microbial communities FEMS Microbiol Ecol 1998 26 79 88 10.1111/j.1574-6941.1998.tb00494.x · DOI
  33. [39]Madigan MT Bender KS Buckley DH Sattley MW Stahl DA Brock Biology of Microorganisms 15th ed New York, USA Pearson Higher Education 2018
  34. [40]Merroun ML Raff J Rossberg A Hennig C Reich T et al Complexation of uranium by cells and S-layer sheets of Bacillus sphaericus JG-A12 Appl Environ Microbiol 2005 71 5532 5543 10.1128/AEM.71.9.5532-5543.2005 16151146 PMC1214696 · DOI
  35. [41]Schultze-Lam S Harauz G Beveridge TJ Participation of a cyanobacterial S layer in fine-grain mineral formation J Bacteriol 1992 174 7971 7981 10.1128/JB.174.24.7971-7981.1992 1459945 PMC207533 · DOI
  36. [42]Sleytr UB Schuster B Egelseer E-M Pum D S-layers: principles and applications FEMS Microbiol Rev 2014 38 823 864 10.1111/1574-6976.12063 24483139 PMC4232325 · DOI · Paper page
  37. [44]Merroun ML Nedelkova M Ojeda JJ Reitz T Fernández ML et al Bio-precipitation of uranium by two bacterial isolates recovered from extreme environments as estimated by potentiometric titration, TEM and X-ray absorption spectroscopic analyses J Hazard Mater 2011 197 1 10 10.1016/j.jhazmat.2011.09.049 22019055 · DOI
  38. [45]Warren LA Haack EA Biogeochemical controls on metal behaviour in freshwater environments Earth-Science Reviews 2001 54 261 320 10.1016/S0012-8252(01)00032-0 · DOI
  39. [46]Beveridge TJ Murray RG Sites of metal deposition in the cell wall of Bacillus subtilis J Bacteriol 1980 141 876 887 10.1128/JB.141.2.876-887.1980 6767692 PMC293699 · DOI
  40. [47]Doyle RJ Matthews TH Streips UN Chemical basis for selectivity of metal ions by the Bacillus subtilis cell wall J Bacteriol 1980 143 471 480 10.1128/JB.143.1.471-480.1980 6772632 PMC294273 · DOI
  41. [48]Thomas KJ Rice CV Revised model of calcium and magnesium binding to the bacterial cell wall Biometals 2014 27 1361 1370 10.1007/s10534-014-9797-5 25315444 PMC4299761 · DOI
  42. [49]Bäuerlein E Biomineralization of unicellular organisms: an unusual membrane biochemistry for the production of inorganic nano- and microstructures Angewandte Chemie - International Edition 2003 42 614 641 12574993
  43. [52]Kluge S Weston J Can a hydroxide ligand trigger a change in the coordination number of magnesium ions in biological systems? Biochemistry 2005 44 4877 4885 10.1021/bi047454j 15779914 · DOI · Paper page
  44. [54]Thompson JB Ferris FG Cyanobacterial precipitation of gypsum, calcite, and magnesite from natural alkaline lake water Geology 1990 18 995 998 10.1130/0091-7613(1990)018<0995:CPOGCA>2.3.CO;2 · DOI · Paper page
  45. [55]Buczynski C Chafetz HS Habit of bacterially induced precipitates of calcium carbonate and the influence of medium viscosity on mineralogy Journal of Sedimentary Research 1991 61 226 233 10.1306/D42676DB-2B26-11D7-8648000102C1865D · DOI
  46. [56]Gilbert PUPA Albrecht M Frazer BH The Organic-Mineral interface in Biominerals Reviews in Mineralogy and Geochemistry 2005 59 157 185 10.2138/rmg.2005.59.7 · DOI
  47. [57]Jürgensen A Widmeyer JR Gordon RA Bendell-Young LI Moore MM et al The structure of the manganese oxide on the sheath of the bacterium Leptothrix discophora: An XAFS study American Mineralogist 2004 89 1110 1118 10.2138/am-2004-0724 · DOI
  48. [58]Braissant O Cailleau G Dupraz C Verrecchia EP Bacterially induced mineralization of calcium carbonate in terrestrial environments: the role of exopolysaccharides and amino acids Journal of Sedimentary Research 2003 73 485 490
  49. [59]Frankel RB Bazylinski DA Biologically induced mineralization by bacteria Reviews in Mineralogy and Geochemistry 2003 54 95 114 10.2113/0540095 · DOI
  50. [61]Ercole C Cacchio P Botta AL Centi V Lepidi A Bacterially induced mineralization of calcium carbonate: the role of exopolysaccharides and capsular polysaccharides Microsc Microanal 2007 13 42 50 10.1017/S1431927607070122 17234036 · DOI
  51. [62]Fishman MR Giglio K Fay D Filiatrault MJ Physiological and genetic characterization of calcium phosphate precipitation by Pseudomonas species Scientific Reports 2018 8 1 14 29976945 PMC6033914
  52. [63]Kim HJ Shin B Lee YS Park W Modulation of calcium carbonate precipitation by exopolysaccharide in Bacillus sp. JH7 Appl Microbiol Biotechnol 2017 101 6551 6561 10.1007/s00253-017-8372-8 28639010 · DOI
  53. [64]Dupraz C Visscher PT Microbial lithification in marine stromatolites and hypersaline mats Trends Microbiol 2005 13 429 438 10.1016/j.tim.2005.07.008 16087339 · DOI
  54. [65]Kremer B Kazmierczak J Stal LJ Calcium carbonate precipitation in cyanobacterial mats from sandy tidal flats of the North sea Geobiology 2008 6 46 56 18380885
  55. [66]Wright DT Oren A Nonphotosynthetic bacteria and the formation of carbonates and evaporites through time Geomicrobiol J 2005 22 27 53 10.1080/01490450590922532 · DOI
  56. [67]Fernández-Remolar DC Preston LJ Sánchez-Román M Izawa MRM Huang L et al Carbonate precipitation under bulk acidic conditions as a potential biosignature for searching life on Mars Earth and Planetary Science Letters 2012 351 352
  57. [68]Tegethoff FW Calcium Carbonate: From the Cretaceous Period into the 21st Century Basel Springer 2001
  58. [69]Rodriguez-Navarro C Jimenez-Lopez C Rodriguez-Navarro A Gonzalez-Muñoz MT Rodriguez-Gallego M Bacterially mediated mineralization of vaterite Geochim Cosmochim Acta 2007 71 1197 1213 10.1016/j.gca.2006.11.031 · DOI
  59. [70]Beveridge TJ Murray RG Uptake and retention of metals by cell walls of Bacillus subtilis J Bacteriol 1976 127 1502 1518 10.1128/JB.127.3.1502-1518.1976 821933 PMC232946 · DOI
  60. [71]Beveridge TJ Koval SF Binding of metals to cell envelopes of Escherichia coli K-12 Appl Environ Microbiol 1981 42 325 335 10.1128/AEM.42.2.325-335.1981 7025758 PMC244009 · DOI
  61. [72]Schultze-Lam S Beveridge TJ Nucleation of celestite and strontianite on a cyanobacterial S-layer Appl Environ Microbiol 1994 60 447 453 10.1128/AEM.60.2.447-453.1994 16349174 PMC201332 · DOI
  62. [73]Deng H Shen XC Wang X-M Du C Calcium carbonate crystallization controlled by functional groups: a mini-review Front Mater Sci 2013 7 62 68 10.1007/s11706-013-0191-y · DOI
  63. [74]Rivadeneyra A Gonzalez-Martinez A Gonzalez-Lopez J Martin-Ramos D Martinez-Toledo M et al Precipitation of phosphate minerals by microorganisms isolated from a fixed-biofilm reactor used for the treatment of domestic wastewater Int J Environ Res Public Health 2014 11 3689 3704 10.3390/ijerph110403689 24699031 PMC4025044 · DOI
  64. [75]Yates KK Robbins LL Production of carbonate sediments by a unicellular green alga American Mineralogist 1998 83 1503 1509 10.2138/am-1998-11-1238 · DOI
  65. [77]Velásquez L Dussan J Biosorption and bioaccumulation of heavy metals on dead and living biomass of Bacillus sphaericus J Hazard Mater 2009 167 713 716 10.1016/j.jhazmat.2009.01.044 19201532 · DOI
  66. [78]Benzerara K Menguy N Guyot F Skouri F de Luca G et al Biologically controlled precipitation of calcium phosphate by Ramlibacter tataouinensis Earth Planet Sci Lett 2004 228 439 449 10.1016/j.epsl.2004.09.030 · DOI
  67. [79]Aloisi G Gloter A Krüger M Wallmann K Guyot F et al Nucleation of calcium carbonate on bacterial nanoglobules Geology 2006 34 1017 10.1130/G22986A.1 · DOI
  68. [81]Asada R Tazaki K Silica biomineralization of unicellular microbes under strongly acidic conditions The Canadian Mineralogist 2001 39 1 16 10.2113/gscanmin.39.1.1 · DOI
  69. [82]Urrutia Mera M Kemper M Doyle R Beveridge TJ The membrane-induced proton motive force influences the metal binding ability of Bacillus subtilis cell walls Appl Environ Microbiol 1992 58 3837 3844 10.1128/AEM.58.12.3837-3844.1992 1335717 PMC183191 · DOI
  70. [84]Martinez RE Pokrovsky OS Schott J Oelkers EH Surface charge and zeta-potential of metabolically active and dead cyanobacteria J Colloid Interface Sci 2008 323 317 325 10.1016/j.jcis.2008.04.041 18471824 · DOI
  71. [85]Hammes F Verstraete* W Key roles of pH and calcium metabolism in microbial carbonate precipitation Rev Environ Sci Biotechnol 2002 1 3 7 10.1023/A:1015135629155 · DOI
  72. [86]Silva-Castro GA Uad I Gonzalez-Martinez A Rivadeneyra A Gonzalez-Lopez J et al Bioprecipitation of calcium carbonate crystals by bacteria isolated from saline environments grown in culture media amended with seawater and real brine Biomed Res Int 2015 2015 1 12 10.1155/2015/816102 26273646 PMC4529937 · DOI
  73. [87]Dhami NK Reddy MS Mukherjee A Biomineralization of calcium carbonates and their engineered applications: a review Front Microbiol 2013 4 1 13 10.3389/fmicb.2013.00314 24194735 PMC3810791 · DOI
  74. [89]Sánchez-Román M Rivadeneyra MA Vasconcelos C McKenzie JA Biomineralization of carbonate and phosphate by moderately halophilic bacteria FEMS Microbiol Ecol 2007 61 273 284 10.1111/j.1574-6941.2007.00336.x 17535298 · DOI
  75. [90]Silva-Castro GA Uad I Rivadeneyra A Vilchez JI Martin-Ramos D et al Carbonate precipitation of bacterial strains isolated from sediments and seawater: formation mechanisms Geomicrobiol J 2013 30 840 850 10.1080/01490451.2013.777492 · DOI
  76. [91]Bosak T Newman DK Microbial kinetic controls on calcite morphology in supersaturated solutions J Sed Res 2005 75 190 199 10.2110/jsr.2005.015 · DOI
  77. [93]Rodriguez-Navarro C Jroundi F Schiro M Ruiz-Agudo E González-Muñoz MT Influence of substrate mineralogy on bacterial mineralization of calcium carbonate: implications for stone conservation Appl Environ Microbiol 2012 78 4017 4029 10.1128/AEM.07044-11 22447589 PMC3346411 · DOI
  78. [94]Zeebe RE Wolf-Gladrow D CO2 in Seawater: Equilibrium, Kinetics, Isotopes Amsterdam; New York Elsevier Science Publishers B.V. 2001
  79. [96]Krause S Liebetrau V Löscher CR Böhm F Gorb S et al Marine ammonification and carbonic anhydrase activity induce rapid calcium carbonate precipitation Geochim Cosmochim Acta 2018 243 116 132 10.1016/j.gca.2018.09.018 · DOI
  80. [97]Ehrlich HL Microbes as geologic agents: their role in mineral formation Geomicrobiol J 1999 16 135 153 10.1080/014904599270659 · DOI
  81. [98]Castanier S Le Métayer-Levrel G Perthuisot J-P Ca-carbonates precipitation and limestone genesis — the microbiogeologist point of view Sedimentary Geology 1999 126 9 23 10.1016/S0037-0738(99)00028-7 · DOI
  82. [99]Visscher PT Reid RP Bebout BM Hoeft SE Macintyre IG et al Formation of lithified micritic laminae in modern marine stromatolites (Bahamas); the role of sulfur cycling American Mineralogist 1998 83 1482 1493 10.2138/am-1998-11-1236 · DOI
  83. [100]Martinez RJ Beazley MJ Taillefert M Arakaki AK Skolnick J et al Aerobic uranium (VI) bioprecipitation by metal-resistant bacteria isolated from radionuclide- and metal-contaminated subsurface soils Environ Microbiol 2007 9 3122 3133 10.1111/j.1462-2920.2007.01422.x 17991039 · DOI
  84. [102]Powers LG Mills HJ Palumbo A V Zhang C Delaney K et al Introduction of a plasmid-encoded phoA gene for constitutive overproduction of alkaline phosphatase in three subsurface Pseudomonas isolates FEMS Microbiology Ecology 2002 41 115 123 19709245
  85. [103]Macaskie LE Bonthrone KM Rouch DA Phosphatase-mediated heavy metal accumulation by a Citrobacter sp. and related enterobacteria FEMS Microbiol Lett 1994 121 141 146 10.1111/j.1574-6968.1994.tb07090.x 7926662 · DOI
  86. [104]Dittrich M Obst M Are picoplankton responsible for calcite precipitation in lakes? Ambio 2004 33 559 564 10.1579/0044-7447-33.8.559 15666689 · DOI
  87. [105]Dick GJ Torpey JW Beveridge TJ Tebo BM Direct identification of a bacterial manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species Appl Environ Microbiol 2008 74 1527 1534 10.1128/AEM.01240-07 18165363 PMC2258647 · DOI
  88. [106]Ehrlich HL Newman DK Kappler A Ehrlich’s Geomicrobiology CRC Press. 2015
  89. [107]Lovley DR Dissimilatory Fe(III) and Mn(IV) reduction Microbiol Rev 1991 55 259 287 10.1128/MR.55.2.259-287.1991 1886521 PMC372814 · DOI
  90. [108]Reguera G Kashefi K The electrifying physiology of Geobacter bacteria, 30 years on Adv Microb Physiol 2019 74 1 96 31126529
  91. [109]Anderson S Appanna VD Huang J Viswanatha T A novel role for calcite in calcium homeostasis FEBS Lett 1992 308 94 96 10.1016/0014-5793(92)81059-U 1644205 · DOI
  92. [110]Yates KK Robbins LL Radioisotope tracer studies of inorganic carbon and Ca in microbially derived CaCO3 Geochim Cosmochim Acta 1999 63 129 136 10.1016/S0016-7037(98)00297-X · DOI
  93. [112]Wright DT Wacey D Precipitation of dolomite using sulphate-reducing bacteria from the Coorong region, South Australia: significance and implications Sedimentology 2005 52 987 1008 10.1111/j.1365-3091.2005.00732.x · DOI · Paper page
  94. [113]González-Muñoz MT De Linares C Martínez-Ruiz F Morcillo F Martín-Ramos D et al Ca-Mg kutnahorite and struvite production by Idiomarina strains at modern seawater salinities Chemosphere 2008 72 465 472 10.1016/j.chemosphere.2008.02.010 18355891 · DOI
  95. [114]Kooli WM Comensoli L Maillard J Albini M Gelb A et al Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects Sci Rep 2018 8 1 11 10.1038/s41598-017-19020-3 29335593 PMC5768810 · DOI
  96. [118]Kang C-H Oh SJ Shin Y Han S-H Nam I-H et al Bioremediation of lead by ureolytic bacteria isolated from soil at abandoned metal mines in South Korea Ecol Eng 2015 74 402 407 10.1016/j.ecoleng.2014.10.009 · DOI
  97. [119]Ngwenya BT Magennis M Podda F Gromov A Self-preservation strategies during bacterial biomineralization with reference to hydrozincite and implications for fossilization of bacteria J R Soc Interface 2014 11 20140845 10.1098/rsif.2014.0845 25253036 PMC4191117 · DOI
  98. [121]Sanchez-Moral S Luque L Cañaveras JC Laiz L Jurado V et al Bioinduced barium precipitation in St. Callixtus and Domitilla catacombs Annals of Microbiology 2004 54 1 12
  99. [122]Rivadeneyra MA Ramos-Cormenzana A Garcia-Cervigon A Formation of bobierrite (magnesium phosphate) crystal aggregates by Acinetobacter sp Mineral J 1987 13 443 447 10.2465/minerj.13.443 2800055 · DOI
  100. [123]Macaskie L Empson R Cheetham A Grey C Skarnulis A Uranium bioaccumulation by a Citrobacter sp. as a result of enzymically mediated growth of polycrystalline HUO2PO4 Science 1992 257 782 784 1496397
  101. [125]Chen Z Pan X Chen H Guan X Lin Z Biomineralization of Pb(II) into Pb-hydroxyapatite induced by Bacillus cereus 12-2 isolated from Lead-Zinc mine tailings J Hazard Mater 2016 301 531 537 10.1016/j.jhazmat.2015.09.023 26468754 · DOI
  102. [126]Konhauser KO Bacterial iron biomineralisation in nature FEMS Microbiol Rev 1997 20 315 326 10.1111/j.1574-6976.1997.tb00317.x · DOI
  103. [127]Konhauser KO Fyfe WS Schultze-Lam S Ferris FG Beveridge TJ Iron phosphate precipitation by epilithic microbial biofilms in Arctic Canada Can J Earth Sci 1994 31 1320 1324 10.1139/e94-114 · DOI
  104. [128]Biswas M Majumdar S Chowdhury T Chattopadhyay B Mandal S et al Bioremediase a unique protein from a novel bacterium BKH1, ushering a new hope in concrete technology Enzyme Microb Technol 2010 46 581 587 10.1016/j.enzmictec.2010.03.005 · DOI
  105. [129]Yee N Phoenix VR Konhauser KO Benning LG Ferris FG The effect of cyanobacteria on silica precipitation at neutral pH: implications for bacterial silicification in geothermal hot springs Chem Geol 2003 199 83 90 10.1016/S0009-2541(03)00120-7 · DOI
  106. [130]Ta K Peng X Chen S Xu H Li J et al Hydrothermal nontronite formation associated with microbes from low-temperature diffuse hydrothermal vents at the South Mid-Atlantic Ridge J Geophys Res 2017 122 2375 2392 10.1002/2017JG003852 · DOI
  107. [131]Lefèvre CT Menguy N Abreu F Lins U Pósfai M et al A cultured greigite-producing magnetotactic bacterium in a novel group of sulfate-reducing bacteria Science 2011 334 1720 1723 22194580
  108. [132]Thiel J Byrne JM Kappler A Schink B Pester M Pyrite formation from FeS and H 2 S is mediated through microbial redox activity. Proceedings of the National Academy of Sciences of the United States of America 2019 PMC6452648 30886102
  109. [133]Gramp JP Sasaki K Bigham JM Karnachuk OV Tuovinen OH Formation of covellite (cus) under biological sulfate-reducing conditions Geomicrobiol J 2006 23 613 619 10.1080/01490450600964383 · DOI
  110. [134]Karnachuk OV Sasaki K Gerasimchuk AL Sukhanova O Ivasenko DA et al Precipitation of Cu-sulfides by copper-tolerant Desulfovibrio isolates Geomicrobiol J 2008 25 219 227 10.1080/01490450802153124 · DOI
  111. [135]Labrenz M Druschel GK Thomsen-Ebert T Gilbert B Welch SA et al Formation of sphalerite (ZnS) deposits in natural biofilms of sulfate-reducing bacteria Science 2000 11099408
  112. [136]Wolicka D Borkowski A Influence of electron donors and copper concentration on geochemical and mineralogical processes under conditions of biological sulphate reduction Acta Geologica Polonica 2014 64 138 146 10.2478/agp-2014-0007 · DOI
  113. [137]Keren R Mayzel B Lavy A Polishchuk I Levy D et al Sponge-associated bacteria mineralize arsenic and barium on intracellular vesicles Nat Commun 2017 8 1 12 10.1038/ncomms14393 28233852 PMC5333131 · DOI
  114. [138]Polgári M Gyollai I Fintor K Horváth H Pál-Molnár E et al Microbially mediated ore-forming processes and cell mineralization Front Microbiol 2019 10 PMC6902787 31849883
  115. [139]Greene AC Madgwick JC Microbial formation of manganese oxides Appl Environ Microbiol 1991 57 1114 1120 10.1128/AEM.57.4.1114-1120.1991 16348459 PMC182854 · DOI
  116. [140]Villalobos M Toner B Bargar J Sposito G Characterization of the manganese oxide produced by Pseudomonas putida strain MnB1 Geochim Cosmochim Acta 2003 67 2649 2662 10.1016/S0016-7037(03)00217-5 · DOI
  117. [141]Webb SM Tebo BM Bargar JR Structural characterization of biogenic Mn oxides produced in seawater by the marine Bacillus sp. strain SG-1 American Mineralogist 2005 90 1342 1357 10.2138/am.2005.1669 · DOI
  118. [143]Lovley DR Phillips EJ Reduction of uranium by Desulfovibrio desulfuricans Appl Environ Microbiol 1992 58 850 856 10.1128/AEM.58.3.850-856.1992 1575486 PMC195344 · DOI
  119. [144]Roh Y Liu SV Li G Huang H Phelps TJ et al Isolation and characterization of metal-reducing Thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado Appl Environ Microbiol 2002 68 6013 6020 10.1128/AEM.68.12.6013-6020.2002 12450823 PMC134454 · DOI
  120. [145]Suzuki Y Kelly SD Kemner KM Banfield JF Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment Appl Environ Microbiol 2003 69 1337 1346 10.1128/AEM.69.3.1337-1346.2003 12620814 PMC150047 · DOI
  121. [146]Achal V Pan X Fu Q Zhang D Biomineralization based remediation of As(III) contaminated soil by Sporosarcina ginsengisoli J Hazard Mater 2012 201-202 178 184 10.1016/j.jhazmat.2011.11.067 22154871 · DOI
  122. [147]Seifan M Berenjian A Application of microbially induced calcium carbonate precipitation in designing bio self-healing concrete World J Microbiol Biotechnol 2018 34 168 10.1007/s11274-018-2552-2 30387067 · DOI

Cited by

Sorted by citations

Authors
Hoffmann, T. D., Reeksting, B. J., & Gebhard, S.
Affiliations
University of Bath (GB)
Corresponding author
  • Hoffmann, Timothy D.
  • Gebhard, Susanne
Venue
Microbiology
Published
2021-04-19
Volume
167
Issue
4
ISSN
  • 1350-0872 (ISSN-L)
  • 1465-2080
OpenAlex
W3137001576
Cited by
206
References
9
Citations by year
2026: 73 · 2025: 48 · 2024: 34 · 2023: 27 · 2022: 20 · 2021: 4
FWCI
1.86
Type
journal article
Language
en
Open access
Locations
  • Microbiology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
Funders
Engineering and Physical Sciences Research Council (EP/PO2081X/1)
Topics
  • Physical Sciences › Environmental Science › Environmental Engineering › Microbial Applications in Construction Materials
  • Physical Sciences › Earth and Planetary Sciences › Earth-Surface Processes › Building materials and conservation
  • Physical Sciences › Materials Science › Biomaterials › Calcium Carbonate Crystallization and Inhibition
Keywords
bacterial metabolism, ureolysis, mineral nucleation, supersaturation, metabolic by-products, bacterial surface interactions, biomineralization, soil consolidation, heavy metal remediation, historic building restoration, self-healing concrete, biotechnology applications
MeSH terms
Bacteria, Minerals, Oxidation-Reduction, Chemical Precipitation, Soil

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review