Surface chemistry allows for abiotic precipitation of dolomite at low temperature
Open accessAbstract
Although the mineral dolomite is abundant in ancient low-temperature sedimentary systems, it is scarce in modern systems below 50 °C. Chemical mechanism(s) enhancing its formation remain an enigma because abiotic dolomite has been challenging to synthesize at low temperature in laboratory settings. Microbial enhancement of dolomite precipitation at low temperature has been reported; however, it is still unclear exactly how microorganisms influence reaction kinetics. Here we document the abiotic synthesis of low-temperature dolomite in laboratory experiments and constrain possible mechanisms for dolomite formation. Ancient and modern seawater solution compositions, with identical pH and pCO2, were used to precipitate an ordered, stoichiometric dolomite phase at 30 °C in as few as 20 d. Mg-rich phases nucleate exclusively on carboxylated polystyrene spheres along with calcite, whereas aragonite forms in solution via homogeneous nucleation. We infer that Mg ions are complexed and dewatered by surface-bound carboxyl groups, thus decreasing the energy required for carbonation. These results indicate that natural surfaces, including organic matter and microbial biomass, possessing a high density of carboxyl groups may be a mechanism by which ordered dolomite nuclei form. Although environments rich in organic matter may be of interest, our data suggest that sharp biogeochemical interfaces that promote microbial death, as well as those with high salinity may, in part, control carboxyl-group density on organic carbon surfaces, consistent with origin of dolomites from microbial biofilms, as well as hypersaline and mixing zone environments.
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1 of 25 cited sources checked · 0 supported · 0 flagged · accuracy not yet measured
- Findingcitation
In the MSW and SSW experiments, differing sulfate content did not significantly impact precipitation of Mg-bearing carbonates.
“In the MSW and SSW experiments, the differing sulfate content did not significantly impact precipitation of Mg-bearing carbonates.”
Quote in the paperSubstantial claim - Findingown data§ Surface chemistry allows for abiotic precipitation of dolomite at low temperature
An ordered, stoichiometric dolomite phase precipitated abiotically at 30 °C in as few as 20 d from ancient and modern seawater solution compositions with identical pH and pCO2.
“Ancient and modern seawater solution compositions, with identical pH and pCO 2 , were used to precipitate an ordered, stoichiometric dolomite phase at 30 °C in as few as 20 d.”
Quote in the paperSubstantial claim - Findingown data
HRTEM-based EDX spectroscopy reveals a predominance of Mg-rich phases at sphere surfaces characteristic of both dolomite (Mg:Ca = 1) and a phase with Mg:Ca ratios greater than 1.
“HRTEM-based energy-dispersive X-ray (EDX) spectroscopy reveals a predominance of Mg-rich phases at sphere surfaces characteristic of both dolomite (Mg:Ca = 1) and a phase with Mg:Ca ratios greater than 1.”
Quote in the paperSubstantial claim - Findingown data
All solutions were initially supersaturated with respect to calcite, aragonite, and dolomite.
“All solutions were initially supersaturated with respect to calcite, aragonite, and dolomite (Table 1).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Table 1
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Findingown data
Experimental vessels containing MSW produced aragonite and calcite.
“Experimental vessels containing MSW produced aragonite and calcite.”
Quote in the paperNot a substantial claim
- Premisecitation
Sedimentary settings with microbial activity promoting rapid cell turnover or death, such as a change from sulfate reduction to methanogenesis, can result in an order of magnitude increase in surface site density on organic remains.
“For example, sedimentary settings with microbial activity promoting rapid cell turnover or death, such as a change from sulfate reduction to methanogenesis (32), can result in an order of magnitude increase in surface site density (33) on organic remains.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [32] 32. Meister P, et al. (2007) Dolomite formation in the dynamic deep biosphere: Results from the Peru Margin. Sedimentology 54(5):1007-1032. source
- cites [33] 33. van der Wal A, Norde W, Zehnder AJB, Lyklema J (1997) Determination of the total charge in the cell walls of gram-positive bacteria. Colloids Surf 9(1-2):81-100. source
- Premisecitation
Dehydration and carbonation of Mg ions are rate-limiting steps in dolomite nucleation.
“Dehydration and carbonation of Mg ions are rate-limiting steps in dolomite nucleation (4).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [4] 4. Brady PV, Krumhans JL, Papenguth HW (1996) Surface complexation clues to dolo- mite growth. Geochim Cosmochim Acta 60(4):727-731. source
- Interpretationreasoning§ Surface chemistry allows for abiotic precipitation of dolomite at low temperature
Natural surfaces, including organic matter and microbial biomass, possessing a high density of carboxyl groups may be a mechanism by which ordered dolomite nuclei form.
“These results indicate that natural surfaces, including organic matter and microbial biomass, possessing a high density of carboxyl groups may be a mechanism by which ordered dolomite nuclei form.”
Quote in the paperSubstantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
- Premisecitation
Degraded natural organic matter with a high fulvic acid character and certain microbial surfaces are known to have high carboxyl-group densities.
“Degraded natural organic matter (NOM) with a high fulvic acid character and certain microbial surfaces are known to have high carboxyl-group densities (Table 2).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Table 2
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Premisecitation
The association between Mg and R-COO- is more favorable than Mg and SO4 based on aqueous complex data (log K MgSO4(aq) = 2.4; log K C10H16MgN2O8 = 2.8).
“Greater effect from carboxyl groups than sulfate is not surprising considering the association between Mg:R-COO -is more favorable than Mg:SO 4 based on aqueous complex data [log K MgSO4(aq) = 2.4; log K C10H16MgN2O8 = 2.8; 29].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [29] 29. Motekaitis RJ, ed. (2004) NIST Critically Selected Stability Constants of Metal Com- plexes Data (v. 8.0 for Windows), National Institute of Standards and Technology.
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- Interpretationcitation
The sequence of Mg complexation/dehydration by surface carboxyl groups creates a thin dolomite template for further precipitation under continued supersaturated conditions.
“We propose that this sequence creates a thin dolomite template for further precipitation under continued supersaturated conditions (e.g., 9).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [9] 9. Mirsal IA, Zankl H (1985) Some phenomenological aspects of carbonate geochemistry. The control effect of transition metals. Geol Rundsch 74(2):367-377. source
- Interpretationreasoning
The results show that the changing chemistry of seawater through time has had a predictable effect on the distribution of dolomite and other marine minerals.
“The results show that the changing chemistry of seawater through time has had a predictable effect on the distribution of dolomite and other marine minerals.”
Quote in the paperSubstantial claim - Interpretationown data
Natural low-temperature dolomite nucleates preferentially in the presence of carboxylated surfaces, such as certain types of organic matter with high carboxyl site densities (>0.1 sites Å-2).
“Because of the spatial association of dolomite exclusively with microsphere surfaces, we propose that natural low-temperature dolomite nucleates preferentially in the presence of carboxylated surfaces, such as certain types of organic matter with high carboxyl sites densities (>0.1 sites Å -2 ; Table 2).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites Table 2
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
- Interpretationcitation
The finding that sulfate content did not significantly impact Mg-bearing carbonate precipitation is consistent with other experimental findings that sulfate inhibition is not solely responsible for slow dolomite precipitation at low temperature.
“This is consistent with other experimental findings (14) that demonstrate that sulfate inhibition (1) is not solely responsible for slow dolomite precipitation at low temperature.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [14] 14. Sánchez-Román M, McKenzie JA, Wagener A, Rivadeneyra MA, Vasconcelos C (2009) Presence of sulfate does not inhibit low-temperature dolomite formation. Earth Planet Sci Lett 285(1-2):131-139. source
- cites [1] 1. Baker PA, Kastner M (1981) Constraints on the formation of sedimentary dolomite. Science 213(4504):214-216. source
- Interpretationown data
Absence of Mg-rich phases in control experiments is strong evidence supporting surface mediated nucleation of these phases.
“Absence of Mg-rich phases in control experiments is strong evidence supporting surface mediated nucleation of these phases.”
Quote in the paperSubstantial claim - Premisecitation
The presence of iron oxides and clay minerals may concentrate carboxyl-rich organic carbon due to sorption.
“For example, the presence of iron oxides and clay minerals may concentrate carboxyl-rich organic carbon due to sorption (37).”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [37] 37. McKnight DM, et al. (1992) Sorption of dissolved organic carbon by hydrous alumi- num and iron oxides occurring at the confluence of Deer Creek with the Snake River, Summit County, Colorado. Environ Sci Technol 26(7):1388-1396. source
- May combine two claims. 24
- Classified as probably not a substantial claim. 5
May combine two claims.
Findingown dataAcetic acid treatment of SSW precipitates revealed low yields of Mg calcite (19-49 mol % Mg) and disordered (64-75 mol % Mg) and ordered dolomite.
“Precipitates treated with weak acetic acid to remove Ca carbonates (e.g., 24) revealed low yields [based on Xray diffraction (XRD) intensity] of Mg calcite (19-49 mol % Mg; calculated from XRD with 3; % MgCO 3 = [(-363.96*d-spacing)+ 1,104.5])and disordered (64-75 mol % Mg; calculated from XRD with 3) and ordered dolomite [CaMg(CO 3 ) 2 ] (Fig. 3).”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [24] 24. Roberts JA, Bennett PC, González LA, Macpherson GL, Milliken KL (2004) Precipitation of dolomite in methanogenic groundwater. Geology 32(4):277-280. source
- cites [3] 3. Arvidson RS, MacKenzie FT (1999) The dolomite problem: Control of precipitation kinetics by temperature and saturation state. Am J Sci 299:257-288. source
The Methods passage describes calculating Mg-calcite composition from XRD d-spacing and gives a regression close to the one cited, though its intercept is 1104.05 rather than 1104.5. It does not establish the cited XRD method for calculating disordered-dolomite composition. The SSW yields and composition ranges are the citing paper’s reported results, not findings attributed to this source. (LLM, conf=0.84)
Experimental — accuracy not yet measured
May combine two claims.
Findingown dataThe precipitated mineral suite is a function of solution composition, whereas surface carboxyl-group density dictated the kinetics of precipitation, with 10 sites Å-2 spheres (20.3 μm) exhibiting slightly faster precipitation kinetics and, in general, more crystalline Mg-bearing phases.
“Our data indicate that the precipitated mineral suite is a function of solution composition, whereas surface carboxyl-group density dictated the kinetics of precipitation, with 10 sites Å -2 spheres (20.3 μm) exhibiting slightly faster precipitation kinetics (Fig. 1), and, in general, more crystalline Mg-bearing phases.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown data§ Surface chemistry allows for abiotic precipitation of dolomite at low temperatureMg-rich phases nucleate exclusively on carboxylated polystyrene spheres along with calcite, whereas aragonite forms in solution via homogeneous nucleation.
“Mg-rich phases nucleate exclusively on carboxylated polystyrene spheres along with calcite, whereas aragonite forms in solution via homogeneous nucleation.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataSEM and HRTEM analysis demonstrate that microspheres are thinly coated with minerals and serve as points of nucleation for nanocrystalline mineral aggregates, whereas larger aragonite crystals precipitate in the pore space.
“Scanning electron microscopy (SEM) and HRTEM analysis demonstrate that microspheres are thinly coated with minerals (Fig. 4) and serve as points of nucleation for nanocrystalline mineral aggregates (Fig. 5; see discussion below), whereas larger aragonite crystals (identified based on elemental analyses and crystal structure) precipitate in the pore space (Fig. 4).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataIn all experimental vessels, changes in pH and CO3 2- did not vary from the control within measurement error, whereas Mg:Ca and the degree of supersaturation for calcite, aragonite, and dolomite decreased more than control values after 20 d.
“In all experimental vessels changes in pH and CO 3 2-values did not vary from the control within the error of measurement whereas values of Mg: Ca and degree of supersaturation for calcite, aragonite, and dolomite decreased (Fig. 1) more than control values after the 20-d period.”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataControl vessels for SSW produced aragonite and calcite; control vessels for MSW produced only aragonite.
“Control vessels for SSW produced aragonite (CaCO 3 ), and calcite (CaCO 3 ); control vessels for MSW produced only aragonite.”
Quote in the paperNot a substantial claimMay combine two claims.
FindingcitationAcetic acid treatment of MSW precipitates revealed extremely low yields of Mg calcite (5-42 mol % Mg) and disordered dolomite (50-51 and 61-75 mol % Mg), likely due to Mg binding to the sphere surface.
“Acetic acid treatments revealed extremely low yields of Mg calcite (5-42 mol % Mg) and disordered dolomite (50-51mol % Mg and, 61-75 mol % Mg), likely due to Mg binding to the sphere surface, thus decreasing the available Mg in solution (25).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [25] 25. Lippmann F (1973) Sedimentary Carbonate Minerals (Springer, New York), p 228. source
May combine two claims.
Findingown dataSurface-associated carbonate precipitates form as nanoparticles with fine-scale layering, and HRTEM with SAED shows lattice fringes of 2.89 Å [211].
“Surface-associated carbonate precipitates form as nanoparticles with fine-scale layering, and HRTEM with selected area electron diffraction (SAED) of precipitates shows lattice fringes of 2.89 Å [211] (Fig. 6).”
Quote in the paperSubstantial claimMay combine two claims.
Findingown dataAll experimental vessels containing SSW produced aragonite and calcite, with a smaller peak consistent with dolomite.
“All experimental vessels containing SSW produced aragonite and calcite, with a smaller peak that is consistent with dolomite (Fig. 2).”
Quote in the paperSubstantial claimMay combine two claims.
InterpretationreasoningA viable abiotic mechanism for primary dolomite nucleation relies on the carboxyl-group density of surfaces to overcome the limitation of Mg dehydration, and such surfaces contribute to stabilization of nanocrystals, limiting dissolution, and promoting crystallinity.
“We have identified a viable abiotic mechanism for primary dolomite nucleation that relies on the carboxyl-group density of surfaces as a means to overcome the limitation of Mg dehydration and that such surfaces contribute to stabilization of nanocrystals, limiting dissolution, and promoting crystallinity.”
Quote in the paperSubstantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
May combine two claims.
PremisecitationThe reaction of Mg(H2O)6 2+ with R-COO- lowers the energy needed for carbonation and subsequent attachment of Ca2+ when the Mg(H2O)5 2+ complex is bound to an RCOO- group compared with dewatering and carbonation of Mg(H2O)6 2+; ΔG is 13.6 kcal mol-1 lower when Mg is dehydrated and bound to RCOO-.
“This reaction lowers the energy needed for carbonation and the subsequent attachment of Ca 2+ when the Mg(H 2 O) 5 2+ complex is bound to an RCOO -group compared with dewatering and carbonation of Mg(H 2 O) 6 2+ (ΔG is 13.6 kcal mol -1 lower when Mg is dehydrated and bound to RCOO -; 28).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [28] 28. Katz AK, Glusker JP, Markham GD, Bock CW (1998) Deprotonation of water in the presence of carboxylate and magnesium ions. J Phys Chem B 102(33):6342-6350. source
May combine two claims.
Interpretationown dataOur data support a surface-nucleated mechanism for EPS in the presence of supersaturated solutions and provide a quantifiable mechanism for the data and observed relationships between dolomite and EPS reported in the literature.
“Our data support a surface-nucleated mechanism for EPS in the presence of supersaturated solutions and provide a quantifiable mechanism for the data and observed relationships between dolomite and EPS reported in the literature.”
Quote in the paperSubstantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
May combine two claims.
PremisecitationOrganic matter is a typical constituent of carbonate rocks and a potential source of carboxylated surfaces that can bind and dehydrate dissolved Mg ions and facilitate dolomitization.
“Organic matter is a typical constituent of carbonate rocks and a potential source of carboxylated surfaces that can bind and dehydrate dissolved Mg ions (30) and facilitate dolomitization (Table 1).”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [30] 30. Sikiri c MD, Füredi-Milhofer H (2006) The influence of surface active molecules on the crystallization of biominerals in solution. Adv Colloid Interface Sci 128-130:135-158. source
May combine two claims.
PremisecitationSurface carboxyl functional groups adsorb Mg2+ enabling formation of a [Mg(H2O)5(R-COO)]+ complex, which results in ejection of a water molecule.
“Surface carboxyl functional groups, however, have been demonstrated to adsorb Mg 2+ enabling the formation of a [Mg(H 2 O) 5 (R-COO)] + complex, which results in the ejection of a water molecule (27):”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [27] 27. Kluge S, Weston J (2005) Can a hydroxide ligand trigger a change in the coordination number of magnesium ions in biological systems? Biochemistry 44(12):4877-4885. source
May combine two claims.
InterpretationcitationMixing zone environments and changing-salinity environments such as sabkhas may promote dolomitization via carboxyl-group density increases resulting from salinity changes.
“Mixing zone environments (34) and changing-salinity environments such as sabkhas (35) may promote dolomitization via carboxyl-group density increases resulting from salinity changes (36).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites [34] 34. Badiozamani K (1973) The Dorag dolomitization model-application to the Middle Ordovician of Wisconsin. J Sediment Petrol 43(4):965-984. source
- cites [35] 35. Müller DW, McKenzie JA, Mueller PA (1990) Abu Dhabi sabkha Persian Gulf revisited: Application of strontium isotopes to test an early dolomitization model. Geology 18(7):618-662. source
- cites [36] 36. Kinnebrew N (2012) Metal sorption onto halophilic Archaea. MS thesis (Univ of Kansas, Lawrence).
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
May combine two claims.
Interpretationreasoning§ Surface chemistry allows for abiotic precipitation of dolomite at low temperatureMg ions are complexed and dewatered by surface-bound carboxyl groups, decreasing the energy required for carbonation.
“We infer that Mg ions are complexed and dewatered by surface-bound carboxyl groups, thus decreasing the energy required for carbonation.”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [27] 27. Kluge S, Weston J (2005) Can a hydroxide ligand trigger a change in the coordination number of magnesium ions in biological systems? Biochemistry 44(12):4877-4885. source
- cites [28] 28. Katz AK, Glusker JP, Markham GD, Bock CW (1998) Deprotonation of water in the presence of carboxylate and magnesium ions. J Phys Chem B 102(33):6342-6350. source
May combine two claims.
InterpretationreasoningBecause our model does not require metabolic activity, only solution supersaturation achieved by any means, it extends beyond microbial surfaces; any type of organic matter with sufficient carboxyl-site density is capable of seeding dolomite precipitation.
“Because our model does not require metabolic activity, only solution supersaturation achieved by any means, it extends beyond microbial surfaces as we propose that any type of organic matter with sufficient carboxyl-site density is capable of seeding dolomite precipitation.”
Quote in the paperSubstantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
May combine two claims.
InterpretationcitationMg:Ca ratios less than 2, such as those thought to have existed in Cambrian-through-Devonian and Cretaceous seawater, promote calcite and dolomite precipitation; Mg:Ca ratios greater than 2, such as those thought to have existed in Permo-Carboniferous, Triassic, and Neogene seawater, promote aragonite precipitates.
“Mg:Ca ratios less than 2, such as those thought to have existed in Cambrian-through-Devonian and Cretaceous seawater (21; and modeled with SSW solution in this study), promote calcite and dolomite precipitation.Mg:Ca ratios greater than 2, such as those thought to have existed in the Permo-Carboniferous, Triassic, and Neogene seawater (21; and modeled with MSW solution in this study) promote arag”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [21] 21. Wilkinson BH, Given KR (1986) Secular variation in abiotic marine carbonates: con- straints on Phanerozoic atmospheric carbon dioxide contents and oceanic Mg/Ca ratios. J Geol 94(3):321-333. source
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductnone givenReplicate experimental vessels were analyzed at 5, 10, and 20 d.
“Replicate experimental vessels were analyzed at 5, 10, and 20 d.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim. May combine two claims.
Study design and conductown dataSalinity and pCO2 were identical for both solutions.
“Salinity and pCO 2 (speciated from measured pH and titrated alkalinity using PhreeqC; 23) were identical for both solutions (Table 1; 21).”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [23] 23. Parkhurst DL, Appelo CAJ (1999) PHREEQC v.2, USGS WRI Report 99-4259.
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites [21] 21. Wilkinson BH, Given KR (1986) Secular variation in abiotic marine carbonates: con- straints on Phanerozoic atmospheric carbon dioxide contents and oceanic Mg/Ca ratios. J Geol 94(3):321-333. source
May combine two claims.
Interpretationown dataAlthough carboxylated surfaces facilitate precipitation of dolomite nuclei at low temperature, solution chemistry fundamentally controls the reactions.
“Although the presence of carboxylated surfaces facilitates precipitation of dolomite nuclei at low temperature, solution chemistry fundamentally controls the reactions.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
Study design and conductnone givenControl vessels contained no polystyrene spheres and were analyzed at 20 d.
“Control vessels contained no polystyrene spheres and were analyzed at 20 d.”
Quote in the paperNot a substantial claimMay combine two claims.
InterpretationreasoningAbiotic precipitation of low-temperature dolomite reported here clarifies geology's 'dolomite problem,' and is not only consistent with, but identifies, mechanisms operative in previous studies implicating microorganisms in this process.
“Abiotic precipitation of low-temperature dolomite reported here clarifies geology's “dolomite problem,” and is not only consistent with, but identifies, mechanisms operative in previous studies implicating microorganisms in this process.”
Quote in the paperSubstantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
Probably not a substantial claim: may not pass S3 (load-bearing).
Study design and conductown dataExperimental solutions were sterilized before use.
“Solutions were then sterilized and dispensed into 60-mL serum bottles.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S4 (based). May combine two claims.
InterpretationreasoningEnvironments that lead to accelerated cell turnover or death, changing or high salinity, or certain settings of weathering product delivery may be the ones where highly carboxylated surfaces are generated.
“It may be that environments that lead to accelerated cell turnover or death, changing or high salinity, or certain settings of weathering product delivery may be the ones where highly carboxylated surfaces are generated.”
Quote in the paperNot a substantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
May combine two claims.
InterpretationreasoningThe results demonstrate the need to concentrate organic surface functional groups as seeds for dolomite nucleation, which would ultimately form nuclei for more extensive dolomitization of carbonate rocks and sediments during later fluid migration.
“It demonstrates the need to concentrate organic surface functional groups as seeds for dolomite nucleation, which would ultimately form the nuclei for more extensive dolomitization of carbonate rocks and sediments during later times of fluid migration.”
Quote in the paperSubstantial claim- The authors state this as an assumption: Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
The authors state this as an assumption.
Carboxylated polystyrene microspheres are adequate models for natural organic surfaces, including microbial EPS, in dolomite nucleation.
“Here we report an example of abiotic laboratory precipitation of dolomite at 30 °C by nucleation on synthetic, carboxylated surfaces, used as models for natural organic surfaces including microbial EPS.”
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The main kinetic factors that inhibit the nucleation or precipitation of dolomite at low temperatures are the high hydration energy of the magnesium ion, the presence of sulfate (even in very low concentrations) related to the formation of complex MgSO4^0, and the low activity of CO3 in most natural solutions.
“the main kinetic factors that inhibit the nucleation or precipitation of dolomite at low temperatures are thought to include: (1) the high hydration energy of the magnesium ion [22,45,51,66,[74][75][76][77][78][79][80]; (2) the presence of sulfate (even in very low concentrations), related to the formation of complex MgSO 4 0 [32,74,81,82]; and (3) the low activity of CO 2- 3 in most natural solut”
From Thermodynamic and Kinetic Studies of Dolomite Formation: A Review (2023) · cites this paper as [77]
The introduction (page unavailable) lists cation desolvation, sulfate inhibition, and lack of solution supersaturation as proposed barriers to low-temperature dolomite formation. The paper does not establish inhibition by sulfate at very low concentrations or specifically attribute it to MgSO₄ complex formation; its Dolomite Identification section reports no significant effect from the sulfate differences tested. Nor does it state that CO₃ activity is low in most natural solutions. (LLM, conf=0.88)
Experimental — accuracy not yet measuredCarboxyl moieties within the EPS matrix are major functional groups that accelerate Mg2+ dehydration.
“Furthermore, carboxyl moieties within EPS matrix were identified as the major functional groups to accelerate Mg 2+ dehydration (Wang et al., 2009;Roberts et al., 2013;Zhang et al., 2015).”
From Catalytic effect of microbially-derived carboxylic acids on the precipitation of Mg-calcite and disordered dolomite: Implications for sedimentary dolomite formation (2020) · cites this paper as Roberts et al., 2013
In “Dolomite Identification” (page not supplied), the paper explains that surface-bound carboxyl groups can displace water from Mg²⁺ and proposes this mechanism for EPS-associated dolomite nucleation. Its experiments used carboxylated microspheres, however; it does not identify carboxyl moieties within an EPS matrix as the major functional groups accelerating Mg²⁺ dehydration. (LLM, conf=0.84)
Experimental — accuracy not yet measuredIn the metal-chelation model, electronegative carboxyl functional groups can bind and partially dewater Mg2+-H2O complexes, generating Mg2+-carboxyl group complexes.
“In the first model, it has suggested that electronegative carboxyl functional groups can bind and partially dewater Mg 2+ -H2O complexes, generating Mg 2+ -carboxyl group complexes.”
From Experimental evidence for abiotic formation of low-temperature proto-dolomite facilitated by clay minerals (2019) · cites this paper as Roberts et al., 2013
Mg2+-carboxyl complex requires much lower energy for carbonation than Mg2+-H2O complex.
“Mg 2+ -carboxyl complex requires much lower energy for carbonation than Mg 2+ -H2O complex”
From Experimental evidence for abiotic formation of low-temperature proto-dolomite facilitated by clay minerals (2019) · cites this paper as Roberts et al., 2013
Mg-carboxyl clusters require less energy for carbonation and subsequent attachment of Ca2+ compared to Mg-H2O complexes.
“Importantly, Mg-carboxyl clusters require less energy for carbonation and subsequent attachment of Ca 2+ compared to Mg-H2O complexes (Kenward et al., 2013;Roberts et al., 2013;Qiu et al., 2017).”
From A non-classical crystallization mechanism of microbially-induced disordered dolomite (2024) · cites this paper as Roberts et al., 2013
The dehydration reaction induced by carboxyl moieties proceeds possibly via a metal-chelation mechanism.
“Previous studies also proposed that the dehydration reaction induced by carboxyl moieties proceeds possibly via a metal-chelation mechanism (Romanek et al., 2009;Roberts et al., 2013).”
From Catalytic effect of microbially-derived carboxylic acids on the precipitation of Mg-calcite and disordered dolomite: Implications for sedimentary dolomite formation (2020) · cites this paper as Roberts et al., 2013
Electronegative carboxyl groups bind to [Mg(H2O)6]2+ ion pairs and form a [Mg(H2O)5(R-COO)]+ complex, with ejection of one water molecule.
“Specifically, the electronegative carboxyl groups bind to [Mg(H2O)6] 2+ ion pairs and form a [Mg(H2O)5(R-COO)] + complex, along with the ejection of one water molecule (Roberts et al., 2013).”
From Catalytic effect of microbially-derived carboxylic acids on the precipitation of Mg-calcite and disordered dolomite: Implications for sedimentary dolomite formation (2020) · cites this paper as Roberts et al., 2013
The newly formed Mg-carboxyl complex requires significantly lower energy when binding CO3 2- than [Mg(H2O)6]2+.
“Upon the dewatering, the newly formed Mg-carboxyl complex requires significantly lower energy when binding CO3 2-than [Mg(H2O)6] 2+ (Roberts et al., 2013;Shen et al., 2014).”
From Catalytic effect of microbially-derived carboxylic acids on the precipitation of Mg-calcite and disordered dolomite: Implications for sedimentary dolomite formation (2020) · cites this paper as Roberts et al., 2013
A thin Ca-Mg carbonate template could form and its growth will take place when a supersaturated condition is maintained.
“In doing so, it is believed that a thin Ca-Mg carbonate template could form and its growth will take place when a supersaturated condition is maintained (Roberts et al., 2013).”
From Catalytic effect of microbially-derived carboxylic acids on the precipitation of Mg-calcite and disordered dolomite: Implications for sedimentary dolomite formation (2020) · cites this paper as Roberts et al., 2013
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Experimental temperature is reported as both 25 °C and 30 °C
MajorThe significance statement says dolomite was synthesized at 25 °C, but the experimental protocol specifies 30 °C. The temperature of the reported synthesis is therefore inconsistent.
“Here we report the abiotic synthesis of dolomite at 25 °C”
“The experimental vessels were capped and solution chemistry was allowed to evolve with gentle agitation in the dark at 30 °C for 20 d.”
MSW leachates are characterized despite being reported below detection
MajorThe results assign mineral phases and magnesium percentages to acid-treated MSW precipitates, while the figure caption says those leachates were below the instrument's detection limit.
“Acetic acid treatments revealed extremely low yields of Mg calcite (5-42 mol % Mg) and disordered dolomite (50-51mol % Mg and, 61-75 mol % Mg)”
“Acetic acid leaching of precipitates from MSW treatments was below the detection limit of the instrument.”
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“Abiotic precipitation of dolomite is even possible, as long as Mg2+ is released from ion pairs or a hydrated state [64,65].”
BackgroundMicrobially catalyzed dolomite formation: From near-surface to burial
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“…formed under a suboxic condition, with nucleation promoted by the presence carboxyl-rich EPS probably secreted by phototrophic organisms (i.e., Roberts et al., 2013; Qiu et al., 2017), and subsequent stabilization enhanced by elevated and sustained alkalinity generation and pH produced by…”
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“The formation of early dolomite was probably directly related to the dissolution of stevensite, although it may have been favored also by the dehydration of magnesium complexes promoted by the carboxylated surfaces of the organic matter present in the stevensite (Roberts et al. 2013).”
BackgroundBacteria-induced mineral precipitation: a mechanistic review
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“For example, in the precipitation of the calcium- magnesium mineral dolomite, the dehydration of the magnesium ion and subsequent carbonation are the rate- limiting step of nucleation [50].”
BackgroundThe magnesium isotope (δ26Mg) signature of dolomites
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BackgroundDissolution enables dolomite crystal growth near ambient conditions
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High salinity facilitates dolomite precipitation mediated by Haloferax volcanii DS52
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“Examples include: (i) actively photosynthesizing microbial mats (Garc ıa-del-Cura et al., 2014); (ii) in association with extracellular polymeric substances with living or dead microbiotas (Bontognali et al., 2010); and (iii) in artificial analogues containing carboxyl groups (Roberts et al., 2013).”
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Room Temperature Magnesite Precipitation
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Demise of Ediacaran dolomitic seas marks widespread biomineralization on the Siberian Platform
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“…more permeable carbonates, calcian dolomite and highest- Mg calcite (approaching the stoichiometry of dolomite) nucleation and precipitation are limited, among other parameters, by lower fluid temperatures (see reviews in Gregg et al., 2015; Kell- Duivestein et al., 2019; Roberts et al., 2013).”
BackgroundMonnin, C., Chavagnac, V., Boulart, C., Ménèz, B., Gérard, M., Gérard, E., Pisapia, C., Quéméneur, M., Erauso, G., Postec, A., et al. (2014) · Biogeosciences · doi:10.5194/bg-11-5687-2014 · Cited by 117 · see citing works
“It is nevertheless well known that magnesite and dolomite do not form at low temperature through simple inorganic precipitation (Morse et al., 2007), although recent works brought new insights into the role of magnesium hydration (Xu et al., 2013) and of surface chemistry (Roberts et al., 2013).”
BackgroundWhat do we really know about early diagenesis of non-marine carbonates?
Boever, E. D., Brasier, M., Foubert, A., & Kele, S. (2017) · Sedimentary Geology · doi:10.1016/j.sedgeo.2017.09.011 · Cited by 86 · see citing works
“, 2015) is needed to bridge a growing gap between current field and lab-based studies at the nanoscale, mostly focussed on the very first steps of carbonate nucleation and precipitation (Benzerara et al., 2006; SánchezRomán et al., 2011; Krause et al., 2012; Roberts et al., 2013; Burne et al., 2014; Brauchli et al., 2…”
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“A decision tree (Figure 6) is useful for outlining beneficial combinations of strategies that may be considered for pilot projects aimed at accelerating carbon mineralization within a TSF. Carbon mineralization strategies are best employed at mine sites that will generate Mg-and Ca-rich mine…”
Searching for biosignatures in sedimentary rocks from early Earth and Mars
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The importance of microbial mats for dolomite formation in the Dohat Faishakh sabkha, Qatar
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“…governing this microbially influenced mineralization process is not fully resolved, it has been demonstrated that the presence of EPS favors the incorporation of Mg into the carbonate mineral, leading to the formation of dolomite (Bontognali et al. 2010; Lenders et al. 2011; Roberts et al. 2013).”
InfluentialThe microbially driven formation of siderite in salt marsh sediments
Lin, C. Y., Turchyn, A. V., Krylov, A. A., & Antler, G. (2019) · Geobiology · doi:10.1111/gbi.12371 · Cited by 69 · see citing works
“A pH lower than 6 means carbonate precipitation will be significantly delayed, and if the pore fluid pH is greater than 7.2, precipitation of calcite or aragonite is favored (Roberts et al., 2013).”
BackgroundInfluentialDissolved silica-catalyzed disordered dolomite precipitation
Fang, Y., & Xu, H. (2022) · American Mineralogist · doi:10.2138/am-2021-7474 · Cited by 69 · see citing works
DiLoreto, Z. A., Garg, S., Bontognali, T. R. R., & Dittrich, M. (2021) · Scientific Reports · doi:10.1038/s41598-021-83676-1 · Cited by 72 · see citing works
Sun, X., Higgins, J. A., & Turchyn, A. V. (2015) · Marine Geology · doi:10.1016/j.margeo.2015.12.011 · Cited by 69 · see citing works
Liu, D., Fan, Q., Papineau, D., Yu, N., Chu, Y., Wang, H., Qiu, X., & Wang, X. (2020) · Chemical Geology · doi:10.1016/j.chemgeo.2019.119415 · Cited by 68 · see citing works
Disi, Z. A. A., Jaoua, S., Bontognali, T. R. R., Attia, E., Al-Kuwari, H. A.-S., & Zouari, N. (2017) · Frontiers in Environmental Science · doi:10.3389/fenvs.2017.00001 · Cited by 66 · see citing works
“Rather, it is likely that also the chemistry of their cell walls or that of their extracellular polymeric substances (EPS) play and important role for the mineralization process (Bontognali et al., 2008, 2010, 2014a; Roberts et al., 2013).”
BackgroundDiLoreto, Z. A., Bontognali, T. R. R., Al Disi, Z. A., Al-Kuwari, H. A. S., Williford, K. H., Strohmenger, C. J., Sadooni, F., Palermo, C., Rivers, J. M., McKenzie, J. A., et al. (2019) · Extremophiles · doi:10.1007/s00792-018-01074-4 · Cited by 66 · see citing works
False biosignatures on Mars: anticipating ambiguity
McMahon, S., & Cosmidis, J. (2021) · Journal of the Geological Society · doi:10.1144/jgs2021-050 · Cited by 66 · see citing works
“The presence of dolomite in microbial mats is explained by organic templating effects and the interaction of Mg2+ with the carboxylic groups of extracellular polymeric substances (Krause et al. 2012; Roberts et al. 2013; Petrash et al. 2017).”
BackgroundCasado, A. I., Alonso‐Zarza, A. M., & Iglesia, Á. L. (2014) · Sedimentary Geology · doi:10.1016/j.sedgeo.2014.07.005 · Cited by 64 · see citing works
Al Disi, Z. A., Zouari, N., Dittrich, M., Jaoua, S., Al-Kuwari, H. A. S., & Bontognali, T. R. R. (2019) · Marine Chemistry · doi:10.1016/j.marchem.2019.103693 · Cited by 61 · see citing works
Wanas, H. A., & Sallam, E. (2016) · Sedimentary Geology · doi:10.1016/j.sedgeo.2016.08.003 · Cited by 62 · see citing works
“…mineral precursors is more rarely recognized and still requires more attention (De Deckker and Last, 1989; culty of Sciences, Menoufiya Wanas), Botha and Hughes, 1992; Wanas, 2002; Bristow et al., 2012; Zhang et al., 2012; Roberts et al., 2013; Casado et al., 2014; Wright and Barnett, 2015).”
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Structure, genesis and resources efficiency of dolomite: New insights and remaining enigmas
Cai, W. K., Liu, J. H., Zhou, C. H., Keeling, J., & Glasmacher, U. A. (2021) · Chemical Geology · doi:10.1016/j.chemgeo.2021.120191 · Cited by 61 · see citing works
Liu, D., Yu, N., Papineau, D., Fan, Q., Wang, H., Qiu, X., She, Z., & Luo, G. (2019) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2019.07.056 · Cited by 61 · see citing works
Frisia, S., Borsato, A., & Hellström, J. (2018) · Earth-Science Reviews · doi:10.1016/j.earscirev.2018.01.014 · Cited by 58 · see citing works
Towards understanding the origin of massive dolostones
Ning, M., Lang, X., Huang, K., Li, C., Huang, T., Yuan, H., Xing, C., Yang, R., & Shen, B. (2020) · Earth and Planetary Science Letters · doi:10.1016/j.epsl.2020.116403 · Cited by 58 · see citing works
Ding, Y., Chen, D., Zhou, X., Guo, C., Huang, T., & Zhang, G. (2019) · Sedimentology · doi:10.1111/sed.12605 · Cited by 60 · see citing works
McCutcheon, J., Power, I. M., Harrison, A. L., Dipple, G. M., & Southam, G. (2014) · Environmental Science & Technology · doi:10.1021/es500344s · Cited by 56 · see citing works
Controls on Cyclic Formation of Quaternary Early Diagenetic Dolomite
McCormack, J., Bontognali, T. R. R., Immenhauser, A., & Kwiecien, O. (2018) · Geophysical Research Letters · doi:10.1002/2018gl077344 · Cited by 52 · see citing works
“Carboxyl groups bound to organic matrices and molecules might be particularly effective in catalyzing dolomite formation, via complexing/binding and dewatering Mg ions (Bontognali et al., 2010, 2014; Roberts et al., 2013).”
BackgroundAcceleration of dolomitization by zinc in saline waters
Vandeginste, V., Snell, O., Hall, M. R., Steer, E., & Vandeginste, A. (2019) · Nature Communications · doi:10.1038/s41467-019-09870-y · Cited by 55 · see citing works
Pore-water squeezing from indurated shales
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Formation of ordered dolomite in anaerobic photosynthetic biofilms
Daye, M., Higgins, J. A., & Bosak, T. (2019) · Geology · doi:10.1130/g45821.1 · Cited by 52 · see citing works
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“Finally, Roberts et al. (2013) also precipitated dolomite at room temperature in laboratory experiments, using polymers similar to EPS as substrate and catalyser.”
MethodPhanerozoic variation in dolomite abundance linked to oceanic anoxia
Li, M., Wignall, P. B., Dai, X., Hu, M., & Song, H. (2021) · Geology · doi:10.1130/g48502.1 · Cited by 51 · see citing works
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Tunable Manipulation of Mineral Carbonation Kinetics in Nanoscale Water Films via Citrate Additives
Miller, Q. R. S., Schaef, H. T., Kaszuba, J. P., Qiu, L., Bowden, M. E., & McGrail, B. P. (2018) · Environmental Science & Technology · doi:10.1021/acs.est.8b00438 · Cited by 50 · see citing works
Pérez-Fernàndez, A., Berninger, U.-N., Mavromatis, V., von Strandmann, P. A. E. P., & Oelkers, É. H. (2017) · Chemical Geology · doi:10.1016/j.chemgeo.2017.07.026 · Cited by 48 · see citing works
“…by the incorporation of Mg (Xu et al. 2013; Hong et al., 2016), and 2) a kinetic limitation due to the slow dehydration rates of the aqueous Mg2+ cation (Brady et al., 1996; Higgins and Hu, 2005; Lippmann, 1973; Leiberman, 1967; Roberts et al., 2013; Slaughter and Hill, 1991; Wang et al., 2016).”
BackgroundJonas, L., Müller, T., Dohmen, R., Immenhauser, A., & Putlitz, B. (2016) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2016.09.034 · Cited by 46 · see citing works
Peng, Y., Shen, B., Lang, X., Huang, K., Chen, J., Yan, Z., Tang, W., Ke, S., Ma, H., & Li, F. (2016) · Geochemistry Geophysics Geosystems · doi:10.1002/2015gc006057 · Cited by 48 · see citing works
“…precipitate dolomite, the energy barrier imposed by Mg21 hydration must be overcome by increase in Mg/Ca [Hs€u and Siegenthaler, 1969], fresh water dilution [Badiozam, 1973], or microbial mediation [Roberts et al., 2013; Vasconcelos and McKenzie, 1997; Vasconcelos et al., 1995; Zhang et al., 2012].”
BackgroundCan Mn–S redox cycling drive sedimentary dolomite formation? A hypothesis
Petrash, D. A., Lalonde, S. V., González-Arismendi, G., Gordon, R. A., Méndez, J. A., Gingras, M. K., & Konhauser, K. O. (2015) · Chemical Geology · doi:10.1016/j.chemgeo.2015.03.017 · Cited by 46 · see citing works
van Maldegem, L. M., Sansjofre, P., Weijers, J. W. H., Wolkenstein, K., Strother, P. K., Wörmer, L., Hefter, J., Nettersheim, B. J., Hoshino, Y., Stefan Schouten, A., et al. (2019) · Nature Communications · doi:10.1038/s41467-019-08306-x · Cited by 43 · see citing works
Estimation of Dolomite Formation: Dolomite Precipitation and Dolomitization
Banerjee, A. (2016) · Journal of the Geological Society of India · doi:10.1007/s12594-016-0430-9 · Cited by 44 · see citing works
“…form at near room temperature (25-35oC) by inorganic precipitation mechanism, and augurs well with the experimental observations (see Machel, 2004, Roberts et al., 2013 and references there in), but nonetheless it is an efficient process that provides dolomite aggregates, which can act as the…”
BackgroundMethodDolomitization of Triassic microbial mat deposits (Hungary): Origin of microcrystalline dolomite
Hips, K., Haas, J., Poros, Z., Kele, S., & Budai, T. (2014) · Sedimentary Geology · doi:10.1016/j.sedgeo.2014.12.002 · Cited by 42 · see citing works
“The results of Roberts et al. (2013) revealed that natural surfaces, including organic matter and 598 microbial biomass, having a high density of carboxyl groups promoted the formation of ordered dolomite 599 nuclei.”
BackgroundMontes-Hernandez, G., Renard, F., Auzende, A., & Findling, N. (2020) · Crystal Growth & Design · doi:10.1021/acs.cgd.9b01005 · Cited by 42 · see citing works
Bustillo, M. Á., Armenteros, I. A., & Hurtado, P. H. (2016) · Sedimentology · doi:10.1111/sed.12345 · Cited by 42 · see citing works
“Bacterial sulphate reduction is favoured by a high concentration of sulphate ions, in the microbial sediments, but Roberts et al. (2013) reported that metabolic activity is not necessary to precipitate dolomite, only a supersaturated solution and any type of organic matter with sufficient…”
BackgroundNanoscale Molecular Fractionation of Organic Matter within Unconventional Petroleum Source Beds
Jubb, A. M., Hackley, P. C., Hatcherian, J. J., et al. (2019) · Energy & Fuels · doi:10.1021/acs.energyfuels.9b02518 · Cited by 41 · see citing works
Zhu, T., Lin, Y., Lu, X., & Dittrich, M. (2018) · Ecological Engineering · doi:10.1016/j.ecoleng.2018.05.038 · Cited by 42 · see citing works
Biogeochemical reappraisal of the freshwater–seawater mixing‐zone diagenetic model
Petrash, D. A., Bialik, O. M., Staudigel, P. T., Konhauser, K. O., & Budd, D. A. (2021) · Sedimentology · doi:10.1111/sed.12849 · Cited by 39 · see citing works
“…have demonstrated that an increase in mobile transition metals such as Mn and Zn have a catalyzing function (Daye et al., 2019; Vandeginste et al., 2019) that other studies have ascribed to dissolved sulphide and the exopolymers excreted by microbes (Zhang et al., 2012a; Roberts et al., 2013).”
BackgroundToroz, D., Song, F., Chass, G. A., & Di Tommaso, D. (2021) · CrystEngComm · doi:10.1039/d1ce00052g · Cited by 39 · see citing works
Miller, Q. R. S., Kaszuba, J. P., Kerisit, S. N., Schaef, H. T., Bowden, M. E., McGrail, B. P., & Rosso, K. M. (2020) · Environmental Science: Nano · doi:10.1039/c9en01382b · Cited by 41 · see citing works
The formation of the dolomite-analogue norsethite: Reaction pathway and cation ordering
Pimentel, C., & Pina, C. M. (2014) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2014.07.021 · Cited by 40 · see citing works
Thermodynamic and Kinetic Studies of Dolomite Formation: A Review
Chen, C., Zhong, H., Wang, X., Ning, M., Wang, X., Ge, Y., Wang, H., Tang, R., & Hou, M. (2023) · Minerals · doi:10.3390/min13121479 · Cited by 43 · see citing works
Han, Z., Qi, P., Zhao, Y., Guo, N., Yan, H., Tucker, M. E., Li, D., Wang, J., & Zhao, H. C. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.821968 · Cited by 37 · see citing works
Huang, Y.-R., Yao, Q.-Z., Li, H., Wang, F.-P., Zhou, G.-T., & Fu, S.-Q. (2019) · Chemical Geology · doi:10.1016/j.chemgeo.2019.06.006 · Cited by 39 · see citing works
Constraining ribbon rock dolomitization by Mg isotopes: Implications for the ‘dolomite problem’
Li, F., Teng, F., Chen, J., Huang, K., Wang, S., Lang, X., Ma, H., Peng, Y., & Shen, B. (2016) · Chemical Geology · doi:10.1016/j.chemgeo.2016.06.003 · Cited by 39 · see citing works
The complex role of microbial metabolic activity in fossilization
Janssen, K., Mähler, B., Rust, J., Bierbaum, G., & McCoy, V. (2021) · Biological Reviews of The Cambridge Philosophical Society · doi:10.1111/brv.12806 · Cited by 37 · see citing works
“…siderite precipitation (because calcite or aragonite is favoured above pH 7.2), whereas even a small amount of sulfate reduction along with iron reduction can keep the pH within the range for siderite precipitation (Lin et al., 2020; Roberts et al., 2013; Soetaert et al., 2007; Zeng & Tice, 2014).”
BackgroundInfluentialGiampouras, M., Garrido, C. J., Zwicker, J., Vadillo, I., Smrzka, D., Bach, W., Peckmann, J., Jiménez‐Gavilán, P., Benavente, J., & Garcı́a-Ruiz, J. M. (2019) · Lithos · doi:10.1016/j.lithos.2019.105215 · Cited by 38 · see citing works
Lacustrine dolomite in deep time: What really matters in early dolomite formation and accumulation?
Guo, P., Wen, H., Li, C., He, H., & Sánchez‐Román, M. (2023) · Earth-Science Reviews · doi:10.1016/j.earscirev.2023.104575 · Cited by 38 · see citing works
Hood, A. V. S., Wallace, M. W., Reed, C. P., Hoffmann, K.-H., & Freyer, E. E. (2015) · Sedimentary Geology · doi:10.1016/j.sedgeo.2015.04.007 · Cited by 35 · see citing works
Transformation of protodolomite to dolomite proceeds under dry-heating conditions
Zheng, W., Liu, D., Yang, S., Fan, Q., Papineau, D., Wang, H., Qiu, X., Chang, B., & She, Z. (2021) · Earth and Planetary Science Letters · doi:10.1016/j.epsl.2021.117249 · Cited by 35 · see citing works
Fracture dolomite as an archive of continental palaeo-environmental conditions
Baldermann, A., Mittermayr, F., Bernasconi, S. M., Dietzel, M., Grengg, C., Hippler, D., Kluge, T., Leis, A., Lin, K., Wang, X., et al. (2020) · Communications Earth & Environment · doi:10.1038/s43247-020-00040-3 · Cited by 33 · see citing works
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Burdalski, R. J., Ribeiro, B. G. O., Gomez, M. G., & Gorman‐Lewis, D. (2022) · Scientific Reports · doi:10.1038/s41598-022-21268-3 · Cited by 35 · see citing works
Paulo, C., Kenney, J. P. L., Persson, P., & Dittrich, M. (2018) · Geosciences · doi:10.3390/geosciences8120471 · Cited by 33 · see citing works
“The carboxyl groups as ociated ith cyanobacterial external structures are often refer ed to as the ain contributors to CaC 3 nucleation on cyanobacteria [51,52].”
BackgroundInfluentialOxygen isotope fractionation in double carbonates
Zheng, Y.-F., & Böttcher, M. E. (2016) · Isotopes in Environmental and Health Studies · doi:10.1080/10256016.2014.977278 · Cited by 33 · see citing works
Wen, Y., Sánchez‐Román, M., Li, Y., Wang, C., Han, Z., Zhang, L., & Gao, Y. (2020) · Sedimentology · doi:10.1111/sed.12744 · Cited by 32 · see citing works
Liu, D., Xu, Y., Yu, Q., Yu, N., Qiu, X., Wang, H., & Papineau, D. (2020) · Journal of Asian Earth Sciences · doi:10.1016/j.jseaes.2020.104301 · Cited by 32 · see citing works
Raudsepp, M. J., Wilson, S., Zeyen, N., Arizaleta, M. L., & Power, I. (2024) · Chemical Geology · doi:10.1016/j.chemgeo.2024.121951 · Cited by 33 · see citing works
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Calcium carbonates: induced biomineralization with controlled macromorphology
Meier, A., Kastner, A., Harries, D., Wierzbicka‐Wieczorek, M., Majzlan, J., Büchel, G., & Kothe, E. (2017) · Biogeosciences · doi:10.5194/bg-14-4867-2017 · Cited by 29 · see citing works
“The process generally was linked to changes induced in the direct microenvironment of the growing bacteria through metabolic features, or to providing nucleation sites for crystallization in a supersaturated environment (Roberts et al., 2013; Seifan et al., 2017; Yan et al., 2017).”
Sauer, S., Crémière, A., Knies, J., Lepland, A., Sahy, D., Martma, T., Noble, S., Schönenberger, J., Klug, M., & Schubert, C. (2017) · Chemical Geology · doi:10.1016/j.chemgeo.2017.09.004 · Cited by 32 · see citing works
“Several factors have been found to influence the Mg-Cacarbonate mineralogy such as the degree of supersaturation, the concentration of Mg2 + and Ca2 + in pore water/seawater, sulphate and phosphate concentration, temperature, partial pressure of CO2, microbial activity, hydrocarbon flux and available nucleation sites/…”
BackgroundRaudsepp, M. J., Wilson, S., Morgan, B., Patel, A., Johnston, S. G., Gagen, E. J., & Fallon, S. J. (2022) · Sedimentology · doi:10.1111/sed.12991 · Cited by 29 · see citing works
A non-classical crystallization mechanism of microbially-induced disordered dolomite
Liu, D., Chen, T., Dai, Z., Papineau, D., Qiu, X., Wang, H., & Benzerara, K. (2024) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2024.05.005 · Cited by 29 · see citing works
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“Organic matter containing a high density of carboxyl-groups may also increase rates of dolomite precipitation (Zhang et al., 2012; Roberts et al., 2013).”
BackgroundOn the growth of anhydrous Mg-bearing carbonates – Implications from norsethite growth kinetics
Lindner, M., Saldi, G. D., Carrocci, S., Bénézeth, P., Schott, J., & Jordan, G. (2018) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2018.07.013 · Cited by 27 · see citing works
Alonso‐Zarza, A. M., Genise, J. F., & Verde, M. (2014) · Palaeogeography Palaeoclimatology Palaeoecology · doi:10.1016/j.palaeo.2014.09.012 · Cited by 28 · see citing works
“Experimental studies also support the idea of direct precipitation of abiogenic dolomite (Roberts et al., 2013).”
ResultThe low temperature hyperalkaline hydrothermal system of the Prony bay (New Caledonia)Preprint
Monnin, C., Chavagnac, V., Boulart, C., et al. (2014) · doi:10.5194/bgd-11-6221-2014 · Cited by 28 · see citing works
“…References Tables Figures J I J I Back Close Full Screen / Esc Printer-friendly Version Interactive Discussion D iscussion P aper | D iscussion P aper | D iscussion P aper | D iscussion P aper | nesium hydration (Xu et al., 2013) and of surface chemistry (Roberts et al., 2013).”
BackgroundMicrobes and the Fossil Record: Selected Topics in Paleomicrobiology
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- Authors
- Roberts, J. A., Kenward, P. A., Fowle, D. A., Goldstein, R. H., González, L. A., & Moore, D. S.
- Affiliations
- University of Kansas (US)
- Department of Geology and
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2013-08-20
- Volume
- 110
- Issue
- 36
- Pages
- 14540-14545
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC3767548
- OpenAlex
- W2066115290
- Cited by
- 246
- References
- 40
- Citations by year
- 2026: 14 · 2025: 21 · 2024: 23 · 2023: 24 · 2022: 18 · 2021: 30 · 2020: 15 · 2019: 24 · 2018: 13 · 2017: 13 · 2016: 21 · 2015: 10 · 2014: 20
- FWCI
- 6.49
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion, other-oa)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Physical Sciences › Materials Science › Biomaterials › Calcium Carbonate Crystallization and Inhibition
- Physical Sciences › Earth and Planetary Sciences › Geochemistry and Petrology › Geochemistry and Elemental Analysis
- Physical Sciences › Environmental Science › Environmental Engineering › CO2 Sequestration and Geologic Interactions
- Keywords
- surface chemistry, carboxyl groups, polystyrene microspheres, magnesium complexation, carbonation, nucleation, calcite, aragonite, biofilm, dolomite origin, seawater chemistry, reaction kinetics
- MeSH terms
- Bacteria, Calcium Carbonate, Carbon Dioxide, Environmental Microbiology, Hydrogen-Ion Concentration, Magnesium, Microscopy, Electron, Scanning, Models, Chemical, Chemical Precipitation, Seawater, Spectrometry, X-Ray Emission, Surface Properties, Temperature, X-Ray Diffraction, Bioreactors, Salinity
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