De novo protein design by deep network hallucination

Cited by (621)

Items 601–621 of 621

1. Recent advances in AI-driven biotherapeutic discovery using protein generative models
   Haelyn Kim, Hakyung Lee, Jinung Song, Juyong Lee · 2026 · Digital Discovery
2. De novo design of small cyclic peptide inhibitors from non-canonical amino acids by cofolding-guided search
   Zander Harteveld, Federica Rigoldi, Chiara Toniolo, Alice Granger, Clement Gensous, Torsten Blum, Ronald Jean-Baptiste, Masa Kobayashi, Gregg Siegal, Sevan Habeshian et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
3. Loop engineering and activity improvement of TEV protease by a phagemid-based selection system
   Hiroki Yamaguchi, Mark Isalan · 2026 · Scientific Reports
4. Advances and applications of engineered protein therapeutics and their role in precision medicine
   Wadha Aldossary, Nada Alqahtani, Layla Asiri, Noora Alkhurayef, Samar Alagl, Sana Alturki, Duha Saad, Mashael Al Yahya, Samah Al-Harthi · 2026 · Frontiers in Bioengineering and Biotechnology
5. Machine Learning Empowers Enzyme Discovery, Structure Prediction, Engineering, and Design
   王木强, Ling Jiang, Haoran Yu, Jiachen Yu, Wenlong Zheng, Jianmin Wu · 2026 · ACS Catalysis
6. Multivalent protein nanocages improve the safety profile of cluster of differentiation 47 checkpoint blockade
   Wonkyung Ahn, Seonghyun Kim, Yeram Lee, Jinkyoung Chae, Dongsu Park, Ki Hwan Chang, Pedro Lee, Sungkuk Cho, Taeerk Kim, In-San Kim et al. · 2026 · International Journal of Biological Macromolecules
7. FlexENN: A Graph Neural Network for Binding Energy Prediction of Globular and Intrinsically Disordered Proteins
   Maryum Irshad, Kassandra M Ori-McKenney, Ruxandra I. Dima · 2026 · Journal of Chemical Information and Modeling
8. Machine learning and artificial intelligence for antigen discovery and immunogen design: A critical appraisal of computational strategies in medical microbiology
   Shoaib Manzoor · 2026 · Journal of Clinical and Translational Research
9. CP-GFM-SGX: Topology-Aware Cyclic Peptide Generation and Design with Receptor-Conditioned Structural Evaluation and Experimental KRAS Affinity Optimization
   Zhiyuan Hu, Russell Dillworth · 2026 · ChemRxiv
10. HURDLER: a cloning method to overcome length limits in designed repeat proteins
    Wenzhao Dai, Matthias Schuster, Oliver Zerbe · 2026 · Nucleic Acids Research
11. Structural compatibility is not enough: Current challenges in protein-protein interaction prediction
    Arne Elofsson · 2026 · Molecular Cell
12. Programming biological behavior with AI-guided de novo protein design
    Philipp Huettemann, Tanja Kortemme · 2026 · Molecular Cell
13. Introduction to the principles of protein engineering
    Josephine Fay Sharp, Michael Kofi Nelson, Meruyert Rustembek, Rituparna Samanta, Lawrence A. Stern · 2026 · Elsevier eBooks
14. Computational protein design approaches for understanding and combating antimicrobial resistance
    Amar Jeet Yadav, Khushboo Bhagat, Aditya Kumar Padhi · 2026 · Elsevier eBooks
15. Design of readers for pathological PTM proteoforms in Alzheimer’s disease
    Kejia Wu, Tiana Schantz, Lemuel Chang, Prarthna Chabria, Elaina Bashaw, Thejesh Reddy Kalatturu, Doo Yeon Kim, An‐Qi Chen, Nathaniel Corley, Asim K. Bera et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
16. Projected Gradient Descent for Hallucination-Based Protein Binder Design
    Magnus Ross, David M Miller, Jude Wells · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
17. SAEM-Pep: A Surrogate-Assisted Experiment-aware Multi-objective Framework for Short Peptide Binder Design
    Mengyao Tan, Zhenghang Chen · 2026 · International Conference on Biomedical and Intelligent Systems (IC-BIS)
18. Residue-Level Progressive Locking with Multi-Beam Search for De Novo Peptide Binder Design Against Complex Targets
    Pengqi Sun, Zhenghang Chen · 2026 · International Conference on Biomedical and Intelligent Systems (IC-BIS)
19. Deep-Learning-Assisted Discovery of Marine Antimicrobial Peptides: A Roadmap Integrating Omics Mining, Structure-Guided Diffusion Design, and Sustainable Aquaculture Translation
    Bo Liu, Hanjing Liu, Yunna Jia, Jie He, Ye Wang, 姜海燕, Zhiyang Xue, Shuqi Guo, Yuanquan Zhu, Lingcong Kong et al. · 2026 · Marine Drugs
20. BindingDB Entry 50020945: Discovery of potent small molecule ubiquitin-specific protease 10 inhibitors with anti-hepatocellular carcinoma activity through regulating YAP expression.
    BindingDB · 2025 · UC San Diego
21. Selective suppression and biasing of chemokine receptors CCR9 and ACKR4 through targeting CCL25 with de novo miniproteins
    Bas De Boer, Thomas D Lamme, Karlijn Verdwaald, Sara Santamaria Medina, Csongor G Nemeth, Elisabeth M Elfrink, Martine J. Smit, Iwan J. P. de Esch, Christopher T. Schafer · 2026 · eLife