The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
PopB-PcrV Interactions are Essential for Pore Formation in the Pseudomonas aeruginosa Type III Secretion System Translocon
Open accessPreprint — published as 10.1128/mbio.02381-22 · Paper page
Abstract
The type III secretion system (T3SS) is a syringe-like virulence factor which delivers bacterial proteins directly into the cytoplasm of host cells. An essential component of the system is the translocon, which creates a pore in the host cell membrane through which proteins are injected. In Pseudomonas aeruginosa , the translocation pore is formed by proteins PopB and PopD and attaches to the T3SS needle via the needle tip protein PcrV. The pore is multimeric, but the exact stoichiometry and structure of the pore are unknown. We took a genetic approach to map contact points within the system by taking advantage of the fact that the translocator proteins of Pseudomonas aeruginosa and the related Aeromonas hydrophila T3SS are incompatible and cannot be freely exchanged. We created chimeric versions of P. aeruginosa PopB and A. hydrophila AopB to intentionally disrupt and restore protein-protein interactions. We identified a chimeric B-translocator that specifically breaks an interaction with the needle tip protein and interferes with the formation of the translocation pore. Breaking the interaction did not disrupt membrane insertion, arguing that the needle tip protein chaperones formation of the translocation pore.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Figures
![FIG 1 Translocator proteins from P. aeruginosa and A. hydrophila are not interchangeable. (A) Model of component parts of the translocon (left) and assembled translocation pore (right). PopB is inserted in the membrane with N- and C-termini toward the extracellular space (54). PopD has its C terminus in the extracellular space (25). The pentameric arrangement of PcrV is based on alignment to the Salmonella needle tip structure (55). (B) Amino acid sequence identity and similarity for P. aeruginosa (accession number AE004091) and A. hydrophila AH-3 (accession number AY528667) translocators. Sequences were aligned with ClustalW. (C) AlphaFold2 models of the needle tip protein from P. aeruginosa (PcrV), A. hydrophila strain AH-3 (AcrV), and two chimeric-fusion V proteins. The hybrid Acollar protein has an AcrV substitution in the N-terminal globular domain [residues 1 to F143 from AcrV are fused to PcrV(Q124–end)]. The hybrid Atip contains the bulkier tip domain of AcrV substituted for the tip domain of PcrV (residues 1 to A158 from PcrV, A179 to S310 from AcrV, and V244 to the end from PcrV). Monomer models were created from protein sequences using AlphaFold2 implemented in Google Colab Notebooks (33, 56) and visualized with UCSF ChimeraX (57). The position of the collar domain is uncertain and varies across models. The tip domain has a high degree of confidence and is static between models (55). Pseudomonas segments are shown in purple, and Aeromonas segments in yellow. (D) All strains lack the pore-forming translocator operon (ΔpcrH-popBD) and produce the indicated needle tip protein: PcrV (strain RP3624), AcrV (strain RP7360), Acollar (strain RP6166), or Atip (strain RP6425). These background strains were complemented with plasmids carrying the indicated translocator proteins along with both export chaperone homologs, pcrH and acrH (Table S1). A549 epithelial cells were infected, and cellular rounding (indicating delivery of ExoS) was monitored by microscopy after 2 h. In our analysis, we consider a translocator system nonfunctional if it leads to less than 25% cell rounding at 2 h (dotted line). Statistical significance was calculated by two-way analysis of variance (ANOVA) with the Tukey multiple-comparison test. n = 3 biological replicates. Error bars show standard deviations. ****, P < 0.0001; ns, not statistically significant (P > 0.05). Statistical data for all comparisons are listed in Table S3. Schematic figures were created using BioRender.com.](/paper-figures/6accd4ff9a9f468da191a23b50de39ce/popb-pcrv-interactions-are-essential-for-pore-formation-in-the-i-pseudomonas-figure-1.jpg)


![FIG 4 Pore formation is disrupted by mismatch between PopB and PcrV. (A, B) A549 cells were infected in the presence of propidium iodide with RP11946 (PAO1 ΔexsE ΔexoSTY pcrV+ ΔpcrH-popBD) or RP11948 [PAO1 ΔexsE ΔexoSTY pcrV::acrV(tip) ΔpcrH-popBD] producing PopD and the indicated translocators. RP2317 (PAO1 ΔexsE ΔexoSTY pcrV+) was the wild-type control. After 2 h, cells were washed and imaged (bright field and fluorescence with Texas red filter). (A) Representative micrographs from one biological replicate are shown. (B) Four biological replicates are quantified. Fluorescent cells were scored manually, and the results of each experiment were normalized to the results for the PopB/PcrV strain. Error bars show standard deviations. Statistical differences were analyzed with two-way ANOVA and the Sidak multiple-comparison test: *, P < 0.05;ns, not statistically significant (P > 0.05). (C) Sheep erythrocytes were pretreated with papain, which cleaves surface glycoproteins and exposes cryptic binding sites for P. aeruginosa hemagglutinin (53). The erythrocytes were infected for 1 h with strain RP3670 [PAO1 ΔexsE exoS(G/A−) pcrV+ ΔpcrH-popBD] or strain RP11222 [PAO1 ΔexsE exoS(G/A−) pcrV::Atip ΔpcrH-popBD] producing PopD and the indicated translocators. The erythrocyte suspension was then mixed, unbroken erythrocytes pelleted, and supernatant UV-Vis absorbance measured at 545 nm. The results of each experiment were normalized to the results for a Triton X-100-lysed control. n = 4 biological replicates. Statistical differences were analyzed with two-way ANOVA and the Sidak multiple-comparison test. Significance thresholds: *, P < 0.05; ****, P < 0.0001; ns, not statistically significant (P > 0.05).](/paper-figures/6b7148491671496c9a52316937066cf5/popb-pcrv-interactions-are-essential-for-pore-formation-in-the-i-pseudomonas-figure-4.jpg)
![FIG 5 Deletion of the secretion regulator Pcr1 does not restore translocation for the translocator-mismatched (Bmix-PcrV) strain. A549 cells were infected for 2 h with strain RP3670 [PAO1 ΔexsE exoS(G/A−) pcrV+ ΔpcrH-popBD], strain RP11222 [PAO1 ΔexsE exoS(G/A−) pcrV::Atip ΔpcrH-popBD], strain RP6370 [PAO1 ΔexsE exoS(G/A−) pcrV+ ΔpcrH-popBD Δpcr1], or strain RP11226 [PAO1 ΔexsE exoS(G/A−) pcrV::Atip ΔpcrH-popBD Δpcr1] complemented with popD and the indicated B-translocator, along with both translocator chaperones, pcrH and acrH. The amount of translocated ExoS was assessed by lysing the host cells with either Triton X-100, which lyses the eukaryotic cell membrane but does not lyse the bacteria, or lysing with SDS, which lyses both the eukaryotic cell and peripherally attached bacteria. ExoS was also monitored in supernatant samples and in bacteria collected from the supernatant after infection (shown in Fig. S7). The presence of ExoS, tubulin (host cell cytoplasmic content), and RNA polymerase subunit α (RPOA, bacterial cytoplasmic content) was assessed by Western blotting. (A and C) Western blots of pcr1+ strains (A) and Δpcr1 strains (C). The amount of ExoS translocated into A549 cells is shown by the Triton-lysed samples. The lower-molecular-weight band is attributable to intracellular cleavage of ExoS (59). The positions of molecular-weight size markers (in kilodaltons) are indicated. SDS-lysed samples show the total amount of ExoS both translocated into host cells and remaining in attached bacteria. (B and D) Quantification of ExoS translocation in Triton-lysed samples for pcr1+ strains (B) and Δpcr1 strains (D). The amount of translocated ExoS is normalized to the amount of tubulin in the same strain and to the amount of ExoS in the strain producing PopB/PcrV. n = 6 biological replicates. Error bars show standard deviations. Statistical differences were analyzed with two-way ANOVA and the Sidak multiple-comparison test. Significance thresholds: *, P < 0.05; **, P < 0.005; ***, P < 0.0005; ns, not statistically significant (P > 0.05).](/paper-figures/214212ea0d314c168759306fd379f5a1/popb-pcrv-interactions-are-essential-for-pore-formation-in-the-i-pseudomonas-figure-5.jpg)

Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Research works printed but not linked: 55
- 2019, On the road to structure-based development of anti-virulence therapeutics targeting the type III secretion system injectisome, Medchemcomm, 10, 1273, 10.1039/C9MD00146H · DOI
- 10.4161/21645515.2014.971641 · DOI
- 10.1038/nrd.2017.23 · DOI · Paper page
- 10.1007/s00294-015-0522-x · DOI
- 10.1128/JCM.43.8.3956-3962.2005 · DOI
- 10.1128/IAI.69.2.1185-1188.2001 · DOI
- 10.1093/infdis/jiv436 · DOI
- 2021, CryoEM of bacterial secretion systems: A primer for microbiologists, Mol Microbiol, 115, 366, 10.1111/mmi.14637 · DOI
- 10.1002/pro.3682 · DOI
- 2018, Visualization of the type III secretion mediated Salmonella-host cell interface using cryo-electron tomography, Elife, 7, e39514, 10.7554/eLife.39514 · DOI
- 10.3389/fmicb.2019.00573 · DOI
- 10.1111/j.1365-2958.2005.04990.x · DOI
- 10.1002/pro.2245 · DOI
- 10.1046/j.1365-2958.2003.03559.x · DOI
- 10.1111/j.1365-2958.2005.04568.x · DOI · Paper page
- 10.1074/jbc.M208383200 · DOI
- 10.1074/jbc.RA118.002766 · DOI
- 10.1016/j.bpj.2013.02.018 · DOI
- 10.1021/bi060452+ · DOI
- 10.1074/jbc.M115.681031 · DOI
- 10.1128/IAI.72.8.4741-4750.2004 · DOI · Paper page
- 10.1128/IAI.73.3.1432-1440.2005 · DOI
- 10.1111/j.1365-2958.2007.05871.x · DOI
- 10.1111/j.1365-2958.2008.06237.x · DOI
- 10.1111/j.1742-4658.2010.07974.x · DOI
- 2016, The Amino-Terminal Part of the Needle-Tip Translocator LcrV of Yersinia pseudotuberculosis Is Required for Early Targeting of YopH and In vivo Virulence, Front Cell Infect Microbiol, 6, 175
- 10.1371/journal.ppat.1005530 · DOI
- 10.1111/j.1365-2958.2007.05620.x · DOI
- 10.1128/IAI.00645-09 · DOI
- 10.1371/journal.ppat.1007928 · DOI
- 10.1046/j.1365-2958.1998.00994.x · DOI
- 10.1074/jbc.M113.517920 · DOI
- 2021, Cell-type-specific hypertranslocation of effectors by the Pseudomonas aeruginosa type III secretion system, Mol Microbiol, 115, 305, 10.1111/mmi.14617 · DOI
- 10.1046/j.1365-2958.2001.02368.x · DOI
- 10.1093/emboj/cdg499 · DOI · Paper page
- 2019, Measurement of Yersinia Translocon Pore Formation in Erythrocytes, Methods Mol Biol, 2010, 211, 10.1007/978-1-4939-9541-7_15 · DOI
- 1972, Purification and properties of hemagglutinin from Pseudomonas aeruginosa and its reaction with human blood cells, Biochim Biophys Acta, 273, 165, 10.1016/0304-4165(72)90204-8 · DOI
- 10.1002/j.1460-2075.1994.tb06341.x · DOI · Paper page
- 10.1038/nrmicro2199 · DOI · Paper page
- 10.1073/pnas.1402658111 · DOI
- 10.1128/JB.01553-07 · DOI
- 10.1016/S0167-4838(98)00213-1 · DOI
- Russo BC , Duncan JK , Goldberg MB. 2019. Topological Analysis of the Type 3 Secretion System Translocon Pore Protein IpaC following Its Native Delivery to the Plasma Membrane during Infection. MBio 10. · DOI
- 2021, The type 3 secretion system requires actin polymerization to open translocon pores, PLoS Pathog, 17, e1009932, 10.1371/journal.ppat.1009932 · DOI
- 2021, Topology and Contribution to the Pore Channel Lining of Plasma Membrane-Embedded Shigella flexneri Type 3 Secretion Translocase IpaB, MBio, 12, e0302121, 10.1128/mBio.03021-21 · DOI
- 10.1093/infdis/jiy438 · DOI
- 10.1002/pro.3428 · DOI
- 10.1128/JB.187.11.3898-3902.2005 · DOI
- 10.1128/AEM.70.11.6914-6919.2004 · DOI
- 10.1073/pnas.0503005102 · DOI · Paper page
- 10.1111/mmi.12069 · DOI
- 10.1038/nmeth.1318 · DOI · Paper page
- Mirdita M , Schütze K , Moriwaki Y , Heo L , Ovchinnikov S , Steinegger M. 2021. ColabFold - Making protein folding accessible to all. bioRxiv. · DOI · Paper page
- Guo EZ , Galán JE. 2021. Cryo-EM structure of the needle filament tip complex of the Salmonella type III secretion injectisome. Proc Natl Acad Sci U S A 118. · DOI
- 10.1046/j.1365-2958.2000.01990.x · DOI
Metadata
- Authors
- Kundracik, E. C., Trichka, J., Díaz Aponte, J. E., & Rietsch, A.
- Affiliations
- Case Western Reserve University (US)
- National Institutes of Health (US)
- Corresponding author
- Rietsch, Arne
- Venue
- mBio
- Publisher
- openRxiv
- Published
- 2022-01-22
- Volume
- 13
- Issue
- 5
- Pages
- e0238122-e0238122
- ISSN
- 2150-7511 (ISSN-L)
- PMC
- PMC9600203
- OpenAlex
- W4297220006
- Cited by
- 18
- References
- 1
- Citations by year
- 2026: 5 · 2025: 7 · 2024: 1 · 2023: 4 · 2022: 1
- FWCI
- 2.05
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- mBio (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Case Western Reserve University
- Imperial College London
- Universitat de Barcelona
- National Institutes of Health (GM007250)
- National Eye Institute (R01EY022052, P30EY011373)
- National Institute of General Medical Sciences (T32GM007250)
- National Institute of Allergy and Infectious Diseases (R21AI107131, R21AI168028)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Escherichia coli research studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Pathogenic Bacteria Studies
- Keywords
- type III secretion system, translocon, PopB, PcrV, pore formation, protein-protein interaction, needle tip, Pseudomonas aeruginosa, effector delivery, host-pathogen interface
- MeSH terms
- Type III Secretion Systems, Antigens, Bacterial, Bacterial Proteins, Pseudomonas aeruginosa, Virulence Factors
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: PopB-PcrV Interactions are Essential for Pore Formation in the Pseudomonas aeruginosa Type III Secretion System Translocon. https://app.cochat.ai/papers/10.1101/2022.01.21.477233
- The paper
- Kundracik, E. C., Trichka, J., Díaz Aponte, J. E., & Rietsch, A. (2022). PopB-PcrV Interactions are Essential for Pore Formation in the Pseudomonas aeruginosa Type III Secretion System Translocon. mBio. https://doi.org/10.1101/2022.01.21.477233
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.