The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
A partnership of the lipid scramblase XK and of the lipid transfer protein VPS13A at the plasma membrane
Open accessPreprint — published as 10.1073/pnas.2205425119
Abstract
Chorea-acanthocytosis and McLeod syndrome are diseases with shared clinical manifestations caused by mutations in VPS13A and XK, respectively. Key features of these conditions are the degeneration of caudate neurons and the presence of abnormally shaped erythrocytes. XK belongs to a family of plasma membrane (PM) lipid scramblases whose action results in exposure of PtdSer at the cell surface. VPS13A is an ER-anchored lipid transfer protein with a putative role in the transport of lipids at contacts of the ER with other membranes. Recently VPS13A and XK were reported to interact by still unknown mechanisms. So far, however, there is no evidence for a colocalization of the two proteins at contacts of the ER with the PM, where XK resides, as VPS13A was shown to be localized at contacts between the ER and either mitochondria or lipid droplets. Here we show that VPS13A can also localize at ER-PM contacts via the binding of its PH domain to a cytosolic loop of XK, that such interaction is regulated by an intramolecular interaction within XK and that both VPS13A and XK are highly expressed in the caudate neurons. Binding of the PH domain of VPS13A to XK is competitive with its binding to intracellular membranes that mediate other tethering functions of VPS13A. Our findings support a model according to which VPS13A-dependent lipid transfer between the ER and the PM is coupled to lipid scrambling within the PM. They raise the possibility that defective cell surface exposure of PtdSer may be responsible for neurodegeneration.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 60
- 10.1038/88821 · DOI
- 10.1038/88825 · DOI
- 2021, The Vps13 Family of Lipid Transporters and Its Role at Membrane Contact Sites, Int J Mol Sci, 22, 2905, 10.3390/ijms22062905 · DOI
- 2021, Insights into VPS13 properties and function reveal a new mechanism of eukaryotic lipid transport, Biochimica Et Biophysica Acta Mol Cell Biology Lipids, 1866, 159003, 10.1016/j.bbalip.2021.159003 · DOI
- 10.1016/0092-8674(94)90136-8 · DOI
- 10.1074/jbc.M114.583419 · DOI
- 2016, Exposure of phosphatidylserine on the cell surface, Nature Publishing Group, 23, 952
- 2019, Novel pathogenic XK mutations in McLeod syndrome and interaction between XK protein and chorein, Neurology Genetics, 5, e328, 10.1212/NXG.0000000000000328 · DOI
- 10.1091/mbc.E19-08-0439-T · DOI
- 10.1073/pnas.2119286119 · DOI
- 2021, Atg2 and Atg9: Intermembrane and interleaflet lipid transporters driving autophagy, Biochimica Et Biophysica Acta Bba - Mol Cell Biology Lipids, 1866, 158956
- 10.1073/pnas.2101562118 · DOI
- J. Adlakha , Z. Hong , P. Li , K. M. Reinisch , Structural and biochemical insights into lipid transport by VPS13 proteins. Biorxiv, 2022.03.11.484024 (2022). · DOI
- 10.1083/jcb.201807019 · DOI
- 10.1242/dmm.036681 · DOI
- 2019, Human VPS13A is associated with multiple organelles and influences mitochondrial morphology and lipid droplet motility, eLife, 8, 728
- 2018, An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations, Nature Communications, 9, 1188, 10.1038/s41467-018-03523-2 · DOI
- 2021, A proximity-dependent biotinylation map of a human cell, Nature, 595, 120, 10.1038/s41586-021-03592-2 · DOI
- 10.1083/jcb.202010004 · DOI
- 10.1083/jcb.201606078 · DOI
- 2020, Cryo-EM reconstruction of a VPS13 fragment reveals a long groove to channel lipids between membranes, J Cell Biol, 219, 3593
- S. Cai , et al., In situ architecture of the lipid transport protein VPS13C at ER-lysosomes membrane contacts. Biorxiv, 2022.03.08.482579 (2022). · DOI · Paper page
- T. J. Melia , K. M. Reinisch , A possible role for VPS13-family proteins in bulk lipid transfer, membrane expansion and organelle biogenesis. J Cell Sci 135 (2022). · DOI
- 10.1016/j.bbalip.2016.02.009 · DOI
- 10.1083/jcb.201804111 · DOI
- 10.1111/tra.12432 · DOI
- 10.1016/S0968-0004(01)01787-X · DOI
- 2017, Amino acid substitution equivalent to human chorea-acanthocytosis I2771R in yeast Vps13 protein affects its binding to phosphatidylinositol 3-phosphate, Hum Mol Genet, 26, ddx054
- 10.1083/jcb.200306020 · DOI
- 10.1016/j.cell.2021.04.011 · DOI · Paper page
- 10.1016/j.pep.2013.08.021 · DOI
- 10.1093/NAR/GKAB1061 · DOI · Paper page
- 2021, The tertiary structure of the human Xkr8–Basigin complex that scrambles phospholipids at plasma mem-branes, Nat Struct Mol Biol, 28, 825, 10.1038/s41594-021-00665-8 · DOI
- 2021, Cryo-EM structures of the caspase-activated protein XKR9 involved in apoptotic lipid scrambling, Elife, 10, e69800, 10.7554/eLife.69800 · DOI
- R. Evans , et al., Protein complex prediction with AlphaFold-Multimer. Biorxiv, 2021.10.04.463034 (2022).
- 10.1038/sj.ejhg.5200866 · DOI
- 10.1016/j.bbrc.2006.12.122 · DOI
- 2020, Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation, Neuron, 107, 891, 10.1016/j.neuron.2020.06.021 · DOI · Paper page
- 2016, Phenotypic abnormalities in a chorea-acanthocytosis mouse model are modulated by strain background, Biochem Bioph Res Co, 472, 118, 10.1016/j.bbrc.2016.02.077 · DOI
- 2021, Therapeutic targeting of Lyn kinase to treat chorea-acanthocytosis, Acta Neuropathologica Commun, 9, 81, 10.1186/s40478-021-01181-y · DOI
- 10.1097/00008480-200312000-00005 · DOI
- 10.1038/ng760 · DOI
- 10.1016/S1097-2765(00)00003-4 · DOI
- 10.1016/S0169-328X(03)00341-3 · DOI
- 10.1002/ana.22598 · DOI
- 10.2741/takeshim · DOI
- 10.1111/j.1365-2141.1988.tb04191.x · DOI
- 2013, Xk-related protein 8 and CED-8 promote phosphatidylserine exposure in apoptotic cells, Sci New York N Y, 341, 403, 10.1126/science.1236758 · DOI
- 2021, Caspase cleavage releases a nuclear protein fragment that stimulates phospholipid scrambling at the plasma membrane, Mol Cell, 81, 1397, 10.1016/j.molcel.2021.02.025 · DOI
- 2020, Vps13 is required for timely removal of nurse cell corpses, Dev Camb Engl, 147, dev191759
- 10.1242/dev.082776 · DOI
- 10.1093/jb/mvt014 · DOI · Paper page
- 10.1126/sciadv.aba3239 · DOI · Paper page
- 2020, Local externalization of phosphatidylserine mediates developmental synaptic pruning by microglia, Embo J, 39, e105380, 10.15252/embj.2020105380 · DOI
- 10.1016/j.ajhg.2016.01.014 · DOI
- 2009, Parthanatos, a messenger of death, Frontiers Biosci Landmark Ed, 14, 1116
- H. C. Kang , T. M. Dawson , V. L. Dawson , “Excitotoxic Programmed Cell Death Involves Caspase-Independent Mechanisms” in Acute Neuronal Injury, D. G. Fujikawa , Ed. (Springer, 2018), pp. 79–88. · DOI
- 10.1523/JNEUROSCI.3461-04.2004 · DOI
- 10.1038/aps.2009.24 · DOI · Paper page
- 10.1038/nature03964 · DOI · Paper page
Metadata
- Authors
- Samander, A. G., Wu, Y., Pineda, S. S., García, F. J., Eisen, J. N., Leonzino, M., Uğur, B., Kellis, M., Heiman, M., & De Camilli, P.
- Affiliations
- Howard Hughes Medical Institute (US)
- Broad Institute (US)
- Massachusetts Institute of Technology (US)
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- openRxiv
- Published
- 2022-03-30
- Volume
- 119
- Issue
- 35
- Pages
- e2205425119-e2205425119
- ISSN
- 0027-8424 (ISSN-L)
- PMC
- PMC9436381
- OpenAlex
- W4292651795
- Cited by
- 79
- References
- 1
- Citations by year
- 2026: 14 · 2025: 14 · 2024: 25 · 2023: 19 · 2022: 7
- FWCI
- 8.69
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- cc-by
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc)
- Funders
- Silicon Valley Community Foundation (2020-221912)
- Yale University
- Massachusetts Institute of Technology
- Harvard University
- Broad Institute
- Chan Zuckerberg Initiative (2020-221912)
- Consiglio Nazionale delle Ricerche
- National Institutes of Health (NS36251, DA-018343, DK-45735)
- Parkinsonfonden (PF-RCE-1946)
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology
- National Institute on Drug Abuse (DA 018343, P30DA018343)
- National Institute of Diabetes and Digestive and Kidney Diseases (DK 45735, P30DK045735, T35DK104689)
- National Institute of Neurological Disorders and Stroke (R01NS036251, NS100802, NS36251, R37NS036251, R01NS100802)
- National Institute of Biomedical Imaging and Bioengineering (T32EB019940)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Keywords
- VPS13A, lipid scramblase, lipid transfer proteins, plasma membrane, phosphatidylserine exposure, chorea-acanthocytosis, McLeod syndrome, pleckstrin homology domain, protein-protein interaction, lipid transfer, neurodegeneration, erythrocyte morphology
- MeSH terms
- Carrier Proteins, Cell Membrane, Endoplasmic Reticulum, Humans, Lipids, Vesicular Transport Proteins, Neuroacanthocytosis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review