PreprintCited by 75Bacteriophages and microbial interactionsAdvanced Electron Microscopy Techniques and ApplicationsEnzyme Structure and Function

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Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation

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Preprint — published as 10.1126/sciadv.ade9674 · Paper page

Abstract

The vast majority of bacteriophages (phages) - bacterial viruses - present a tail that allows host recognition, cell wall perforation and safe channelling of the viral DNA from the capsid to the cytoplasm of the infected bacterium. The majority of tailed phages bears a long flexible tail ( Siphoviridae ) at the distal end of which a tip complex, often called baseplate, harbours one or more Receptor Binding Protein·s (RBPs). Interaction between the RBPs and the host surface triggers cell wall perforation and DNA ejection, but little is known on these mechanisms for Siphoviridae . Here, we present the structure of siphophage T5 tip at high resolution, determined by electron cryo-microscopy, allowing to trace most of its constituting proteins, including 35 C-terminal residues of the Tape Measure Protein. We also present the structure of T5 tip after interaction with its E. coli receptor FhuA reconstituted into nanodisc. It brings out the dramatic conformational changes underwent by T5 tip upon infection, i . e . bending of the central fibre on the side, opening of the tail tube and its anchoring to the membrane, and formation of a transmembrane channel. These new structures shed light on the mechanisms of host recognition and activation of the viral entry for Siphoviridae .

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Research works printed but not linked: 52

  1. 10.1038/nrmicro1750 · DOI
  2. S. Uyttebroek , B. Chen , J. Onsea , F. Ruythooren , Y. Debaveye , D. Devolder , I. Spriet , M. Depypere , J. Wagemans , R. Lavigne , J.-P. Pirnay , M. Merabishvili , P. De Munter , W. E. Peetermans , L. Dupont , L. Van Gerven , W.-J. Metsemakers , Safety and efficacy of phage therapy in difficult-to-treat infections: a systematic review. Lancet Infect Dis, S1473-3099(21)00612–5 (2022).
  3. 10.1128/MMBR.00014-11 · DOI
  4. 10.1007/978-1-4614-0980-9_6 · DOI
  5. 10.1016/j.tcb.2017.05.003 · DOI
  6. 2020, Structure, function and assembly of the long, flexible tail of siphophages, Curr Opin Virol, 45, 34, 10.1016/j.coviro.2020.06.010 · DOI
  7. 2019, Atomic structures of an entire contractile injection system in both the extended and contracted states, Nat Microbiol, 4, 1885, 10.1038/s41564-019-0530-6 · DOI
  8. 10.1016/j.cell.2019.02.020 · DOI
  9. 10.1038/s41586-020-2186-z · DOI
  10. 10.1007/978-1-60327-164-6_13 · DOI
  11. 10.1128/JVI.02262-13 · DOI
  12. 1945, Bacteriophage-Resistant Mutants in Escherichia Coli, Genetics, 30, 119, 10.1093/genetics/30.2.119 · DOI
  13. 10.1073/pnas.1909645116 · DOI
  14. 10.1038/s41467-017-02049-3 · DOI
  15. 2008, Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities, J Biol Chem, 286, 13556
  16. 10.3390/v7122946 · DOI
  17. 10.1128/JVI.02135-13 · DOI
  18. 10.1016/j.biochi.2012.05.021 · DOI
  19. 10.1074/jbc.M113.501536 · DOI
  20. 10.1128/JB.00106-09 · DOI
  21. 1996, FhuA, a transporter of the Escherichia coli outer membrane, is converted into a channel upon binding of bacteriophage T5, EMBO J, 15, 1850, 10.1002/j.1460-2075.1996.tb00535.x · DOI
  22. 10.1016/j.bpj.2010.04.048 · DOI
  23. 2017, Solid-State NMR H-N-(C)-H and H-N-C-C 3D/4D Correlation Experiments for Resonance Assignment of Large Proteins, Chemphyschem, 18, 2697, 10.1002/cphc.201700572 · DOI
  24. 10.1002/pro.3749 · DOI
  25. 10.1038/nature17971 · DOI
  26. 2020, Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage, PLoS Pathog, 16, e1008314, 10.1371/journal.ppat.1008314 · DOI
  27. 10.1073/pnas.1200966109 · DOI
  28. 10.1073/pnas.1000232107 · DOI
  29. 10.1016/j.jmb.2007.05.022 · DOI
  30. 10.1016/j.pep.2015.02.003 · DOI
  31. 10.1016/0022-2836(73)90418-x · DOI
  32. 10.1016/0042-6822(83)90199-X · DOI
  33. 10.1038/415553a · DOI
  34. 10.1016/0022-2836(74)90500-2 · DOI
  35. 2020, Structure and mechanism of DNA delivery of a gene transfer agent, Nat Commun, 11, 3034, 10.1038/s41467-020-16669-9 · DOI
  36. 2021, Target highlights in CASP14: Analysis of models by structure providers, Proteins, 89, 1647, 10.1002/prot.26247 · DOI
  37. 1992, Involvement of phage T5 tail proteins and contact sites between the outer and inner membrane of Escherichia coli in phage T5 DNA injection, J. Biol. Chem, 267, 3173, 10.1016/S0021-9258(19)50711-6 · DOI
  38. 10.1021/acs.chemrev.6b00690 · DOI
  39. 10.1107/S2059798319006880 · DOI
  40. 10.1038/nmeth.2472 · DOI
  41. 10.1016/j.jsb.2015.11.003 · DOI
  42. 10.1016/j.jsb.2006.05.009 · DOI
  43. 10.7554/eLife.42166 · DOI
  44. C.-A. Arnaud , thesis, University Grenoble-Alpes (2017).
  45. 10.1107/S0907444910007493 · DOI · Paper page
  46. 10.1107/S0907444909052925 · DOI · Paper page
  47. 10.1002/pro.3330 · DOI · Paper page
  48. 10.1093/bioinformatics/bts446 · DOI
  49. 10.1107/S2052252519007619 · DOI
  50. 10.1002/pmic.201200565 · DOI
  51. 10.1038/nbt.1511 · DOI · Paper page
  52. 10.1016/j.virol.2016.05.007 · DOI

Metadata

Authors
Linares, R., Arnaud, C.-A., Effantin, G., Darnault, C., Epalle, N. H., Erba, E. B., Schoehn, G., & Breyton, C.
Affiliations
Centre National de la Recherche Scientifique (FR)
Corresponding author
Breyton, Cécile
Venue
Science Advances
Publisher
openRxiv
Published
2022-09-20
Volume
9
Issue
12
Pages
eade9674-eade9674
ISSN
2375-2548 (ISSN-L)
OpenAlex
W4360828793
Cited by
75
References
1
Citations by year
2026: 21 · 2025: 26 · 2024: 18 · 2023: 9 · 2022: 1
FWCI
11.95
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Science Advances (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • HAL (submittedVersion, other-oa)
Funders
  • Infrastructures en Biologie Santé et Agronomie (ANR-17-EURE-0003, ANR-10-INBS-05-02)
  • Agence Nationale de la Recherche (ANR-21-CE11-0023, ANR-17-EURE-0003, ANR-10-INBS-05-02, ANR-10- INBS-05, ANR-17-EURE-, ANR-20-CE11-0023, ANR-16-CE11-0027, ANR-17, ANR-10, ANR-10-INBS-0005)
  • European Synchrotron Radiation Facility
  • Fondation pour la Recherche Médicale (ANR-17-EURE-0003, ANR-10-INBS-05-02)
  • Centre National de la Recherche Scientifique
  • Région Auvergne-Rhône-Alpes (ANR-17-EURE-0003, ANR-10-INBS-05-02)
  • French Infrastructure for Integrated Structural Biology (ANR-17-EURE-0003, ANR-10-INBS-05–02, UMS 3518, ANR-10-INBS-0.5)
Topics
  • Life Sciences › Immunology and Microbiology › Virology › Bacteriophages and microbial interactions
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Advanced Electron Microscopy Techniques and Applications
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
Keywords
bacteriophage T5, receptor binding protein, FhuA, transmembrane channels, phage infection mechanism, Siphoviridae, nanodisc reconstitution
MeSH terms
Bacteriophages, Cell Wall, Escherichia coli, Siphoviridae, Cryoelectron Microscopy

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