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Anillin Related Mid1 as an Adaptive and Multimodal Contractile Ring Anchoring Protein: A Simulation Study
Open accessPreprint — published as 10.1016/j.str.2023.11.010 · Paper page
Abstract
The organization of the cytokinetic ring at the cell equator of dividing animal and fungi cells depends crucially on the anillin scaffold proteins. In fission yeast, anillin related Mid1 binds to the plasma membrane and helps anchor and organize a medial broad band of cytokinetic nodes, which are the precursors of the contractile ring. Similar to other anillins, Mid1 contains a C terminal globular domain with two potential regions for membrane binding, the Pleckstrin Homology (PH) and C2 domains, and an N terminal intrinsically disordered region that is strongly regulated by phosphorylation. Previous studies have shown that both PH and C2 domains can associate with the membrane, preferring phosphatidylinositol-(4,5)-bisphosphate (PIP 2 ) lipids. However, it is unclear if they can simultaneously bind to the membrane in a way that allows dimerization or oligomerization of Mid1, and if one domain plays a dominant role. To elucidate Mid1’s membrane binding mechanism, we used the available structural information of the C terminal region of Mid1 in all-atom molecular dynamics (MD) near a membrane with a lipid composition based on experimental measurements (including PIP 2 lipids). The disordered L3 loop of C2, as well as the PH domain, separately bind the membrane through charged lipid contacts. In simulations with the full C terminal region started away from the membrane, Mid1 binds through the L3 loop and is stabilized in a vertical orientation with the PH domain away from the membrane. However, a configuration with both C2 and PH initially bound to the membrane remains associated with the membrane. These multiple modes of binding may reflect Mid1’s multiple interactions with membranes and other node proteins, and ability to sustain mechanical forces.
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Highly accurate protein structure prediction with AlphaFold
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Metadata
- Authors
- Hall, A. R., Choi, Y. K., Im, W., & Vavylonis, D.
- Affiliations
- Lehigh University (US)
- Corresponding author
- Vavylonis, Dimitrios
- Venue
- Structure
- Publisher
- openRxiv
- Published
- 2023-01-27
- Volume
- 32
- Issue
- 2
- Pages
- 242-252.e2
- ISSN
- 0969-2126 (ISSN-L)
- PMC
- PMC10872332
- OpenAlex
- W4389781434
- Cited by
- 3
- References
- 1
- Citations by year
- 2026: 1 · 2025: 1 · 2024: 1
- FWCI
- 0.27
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Structure (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- PubMed Central (submittedVersion)
- Funders
- National Science Foundation (2111728, TG-MCB180021, DE-AC02–06CH11357, MCB180021, 2019035)
- U.S. Department of Energy (DE‐ AC02‐06CH11357, AC02‐06CH11357, 06CH11357, DE-AC02-)
- Lehigh University
- National Institutes of Health (DE-AC02–06CH11357)
- Office of Science (AC02‐06CH11357, 2019035, DE-AC02, 06CH11357, DE-AC02-06CH11357)
- National Institute of General Medical Sciences (R35GM136372)
- Office of Advanced Cyberinfrastructure (2019035)
- Argonne National Laboratory (DE- AC02-06-CH11357, DE-AC02, AC02–06CH11357, Contract DE-AC02-06CH11357, 06CH11357)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Keywords
- MID1, anillin, contractile ring, cytokinesis, Schizosaccharomyces pombe, pleckstrin homology domain, C2 domain, membrane binding, protein-membrane interactions, mechanical forces
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