The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Cell type-specific control of secondary cell wall formation by Musashi-type translational regulators in Arabidopsis
Open accessPreprint — published as 10.7554/elife.88207.3 · Paper page
Abstract
Deciphering the mechanism of secondary cell wall/SCW formation in plants is key to understanding their development and the molecular basis of biomass recalcitrance. Although transcriptional regulation is essential for SCW formation, little is known about the implication of post-transcriptional mechanisms in this process. Here we report that two bonafide RNA-binding proteins homologous to the animal translational regulator Musashi, MSIL2 and MSIL4, function redundantly to control SCW formation in Arabidopsis. MSIL2/4 interactomes are similar and enriched in proteins involved in mRNA binding and translational regulation. MSIL2/4 mutations alter SCW formation in the fibers, leading to a reduction in lignin deposition, and an increase of 4- O -glucuronoxylan methylation. In accordance, quantitative proteomics of stems reveal an overaccumulation of glucuronoxylan biosynthetic machinery, including GXM3, in the msil2/4 mutant stem. We showed that MSIL4 immunoprecipitates GXM mRNAs, suggesting a novel aspect of SCW regulation, linking post-transcriptional control to the regulation of SCW biosynthesis genes.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 75
- 2011, The use of FTIR spectroscopy to monitor modifications in plant cell wall architecture caused by cellulose biosynthesis inhibitors, Plant Signaling & Behavior, 6, 1104, 10.4161/psb.6.8.15793 · DOI
- 10.1093/nar/gku340 · DOI
- 10.1016/0008-6215(83)88244-5 · DOI
- 10.1016/0003-2697(73)90377-1 · DOI · Paper page
- 10.1016/j.copbio.2012.11.004 · DOI
- 10.1093/bioinformatics/btaa118 · DOI · Paper page
- 2013, Evolution of xylan substitution patterns in gymnosperms and angiosperms: implications for xylan interaction with cellulose, Plant Physiology, 171, 2418
- 10.1002/pmic.201200565 · DOI
- 10.1093/jxb/erv060 · DOI
- 10.1104/pp.17.01468 · DOI
- 10.1126/science.aam9243 · DOI
- 2020, Beyond target-decoy competition: stable validation of peptide and protein identifications in mass spectrometry-based discovery proteomics, Analytical Chemistry, 92, 14898, 10.1021/acs.analchem.0c00328 · DOI
- 10.1074/jbc.RA119.007220 · DOI
- 2020, Implementing the CRISPR/Cas9 technology in Eucalyptus hairy roots using wood-related genes, International Journal of Molecular Sciences, 21, 3408, 10.3390/ijms21103408 · DOI
- 10.1016/j.sbi.2012.11.006 · DOI
- 2017, Musashi 1 regulates the timing and extent of meiotic mRNA translational activation by promoting the use of specific CPEs, Nature Structural and Molecular Biology, 24, 672, 10.1038/nsmb.3434 · DOI
- 10.1074/jbc.RA118.002243 · DOI
- 2002, The Arabidopsis cev1 links cell wall signaling to jasmonate and ethylene responses, The plant cel, 14, 1557, 10.1105/tpc.002022 · DOI
- 10.1146/annurev-cellbio-100814-125446 · DOI
- 2017, An even pattern of xylan substitution is critical for interaction with cellulose in plant cell walls, Nature Plants, 11, 859
- 10.1007/BF01279855 · DOI
- 10.1021/jf00086a020 · DOI
- 10.1104/pp.81.3.802 · DOI
- 2018, Arabidopsis WRKY50 and TGA transcription factors synergistically activate expression of PR1, Frontiers in Plant Science, 9, 930, 10.3389/fpls.2018.00930 · DOI
- 2019, Lignin-polysaccharide interactions in plant secondary cell walls revealed by solid-state NMR, Nature Communications, 10, 347, 10.1038/s41467-018-08252-0 · DOI
- 10.1186/gb-2013-14-4-r36 · DOI · Paper page
- 10.1158/1078-0432.CCR-16-2728 · DOI
- 10.1093/jxb/erv533 · DOI
- 2012, Fast gapped-read alignment with Bowtie 2, Nature Methods, 9, 357, 10.1038/nmeth.1923 · DOI · Paper page
- 10.1007/BF03052266 · DOI
- 10.1371/journal.ppat.1001111 · DOI
- 2023, FERONIA and wall-associated kinases coordinate defense induced by lignin modification in plant cell walls, Science Advances, 9, eadf7714, 10.1126/sciadv.adf7714 · DOI
- 10.1006/meth.2001.1262 · DOI · Paper page
- 2017, Cytoplasmic stress granules: Dynamic modulators of cell signaling and disease, Biochimica et Biophysica Acta Molecular Basis of Disease, 1863, 884, 10.1016/j.bbadis.2016.12.022 · DOI
- 10.1073/pnas.0508887103 · DOI
- 10.1093/aob/mcy005 · DOI
- 10.1104/pp.17.00269 · DOI
- 2014, The role of the secondary cell wall in plant resistance to pathogens, Frontiers in Plant Science, 5, 358
- 10.1105/tpc.106.047043 · DOI
- 10.1073/pnas.1005456107 · DOI
- 10.1038/nature13308 · DOI
- 2020, HyperTRIBE uncovers increased MUSASHI-2 RNA binding activity and differential regulation in leukemic stem cells, Nature Communications, 11, 2026, 10.1038/s41467-020-15814-8 · DOI
- 2014, Musashi-2 controls cell fate, lineage bias, and TGF-b signailing in HSCs, The Journal of Experimental Medecine, 211, 71, 10.1084/jem.20130736 · DOI
- 2022, The PRIDE database and related tools and resources in 2019: improving support for quantification data, Nucleic Acids Research, 47, D442
- 2018, Long cold exposure induces transcriptional and biochemical remodelling of xylem secondary cell wall in Eucalyptus, Tree Physiology, 38, 409, 10.1093/treephys/tpx062 · DOI
- 2019, A systems biology view of wood formation in Eucalyptus grandis trees submitted to different potassium and water regimes, The New Phytologist, 223, 766, 10.1111/nph.15802 · DOI
- 10.1105/tpc.16.00562 · DOI
- 10.1105/tpc.104.023705 · DOI
- 10.1002/rcm.5060 · DOI
- 2021, The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis, Nature Communications, 12, 1298, 10.1038/s41467-021-21382-2 · DOI
- 2010, Hemicelluloses, Annual Review in Plant Biology, 61, 263, 10.1146/annurev-arplant-042809-112315 · DOI
- 10.1105/tpc.17.00854 · DOI
- 2021, Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures, The Plant Cell, 33, 200, 10.1093/plcell/koaa019 · DOI
- 10.1105/tpc.105.030767 · DOI
- 10.1146/annurev-biochem-080111-092106 · DOI
- 10.1038/nature14099 · DOI
- 2019, Covalent interactions between lignin and hemicelluloses in plant secondary cell walls, Current Opinion in Biotechnology, 56, 97, 10.1016/j.copbio.2018.10.010 · DOI
- 1979, Automated-method for the determination of pectic substances, Lebensmittel-Wissenschaft Und-Technologie, 12, 247
- 10.1073/pnas.1208097109 · DOI
- 2016, Saccharification protocol for small-scale lignocellulosic biomass samples to test processing of cellulose into glucose, Bio-Protocol, 6, 1701
- 2014, MiR397b regulates both lignin content and seed number in Arabidopsis via modulating a laccase involved in lignin biosynthesis, Plant Biotechnology Journal, 12, 1132, 10.1111/pbi.12222 · DOI
- 10.1016/j.biotechadv.2016.06.001 · DOI
- 2017, Musashi 1 regulates the timing and extent of meiotic mRNA translational activation by promoting the use of specific CPEs, Nature Structural and Molecular Biology, 24, 672, 10.1038/nsmb.3434 · DOI
- 2018, A glycosyl transferase family 43 protein involved in xylan biosynthesis is associated with straw digestibility in Brachypodium distachyon, The New Phytologist, 218, 974, 10.1111/nph.15089 · DOI
- 10.1093/bioinformatics/btw580 · DOI
- 2019, Xylan in the middle: understanding xylan biosynthesis and its metabolic dependencies toward improving wood fiber for industrial processing, Frontiers in Plant Science, 25, 176
- 10.1111/j.1365-313X.2008.03724.x · DOI
- 2012, The Arabidopsis NPR1 protein is a receptor for the plant defense hormone salicylic acid, Cell Reports, 1, 639, 10.1016/j.celrep.2012.05.008 · DOI
- 2022, Outstanding questions on xylan biosynthesis, Plant Science, 325, 111476, 10.1016/j.plantsci.2022.111476 · DOI
- 10.1093/pcp/pch151 · DOI
- 2014, Modification of the degree of 4-O-methylation of secondary cell wall glucuronoxylan, Plant Science, 219-220, 42, 10.1016/j.plantsci.2014.01.005 · DOI
- 2018, Recent advances in the transcriptional regulation of secondary cell wall biosynthesis in the woody plants, Frontiers in Plant Sciences, 9, 1535, 10.3389/fpls.2018.01535 · DOI
- 10.1104/pp.15.01011 · DOI
- 10.1016/j.plantsci.2014.09.009 · DOI
- 2022, Liquid-liquid phase separation of RBGD2/4 is required for heat stress resistance in Arabidopsis, Developmental Cell, 57, 583, 10.1016/j.devcel.2022.02.005 · DOI
Metadata
- Authors
- Kairouani, A., Pontier, D., Picart, C., Mounet, F., Martinez, Y., Le-Bot, L., Fanuel, M., Hammann, P., Belmudes, L., Merret, R., Azevedo, J., Carpentier, M.-C., Gagliardi, D., Couté, Y., Sibout, R., Bies-Etheve, N., & Lagrange, T.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Corresponding author
- Lagrange, Thierry
- ORCID
- Venue
- bioRxiv (Cold Spring Harbor Laboratory)
- Publisher
- openRxiv
- Published
- 2023-03-20
- OpenAlex
- W4327915427
- Cited by
- 0
- References
- 1
- Type
- posted content
- Language
- en
- Open access
- green
- doi.org
- Locations
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- HAL (submittedVersion, cc-by)
- Funders
- Agence Nationale de la Recherche (ANR-10-INBS-08, ANR-17-EURE-0003, ANR-12-BSV6-0010, ANR-17-EURE-, Proteomics French Infrastructure,ANR-10-INBS-08, ANR18, ANR-08-BLAN-0206, ANR-17, ANR-10, ANR-18-EURE-0019)
- Centre National de la Recherche Scientifique
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Polysaccharides and Plant Cell Walls
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant Gene Expression Analysis
- Keywords
- secondary cell wall formation, RNA-binding proteins, post-transcriptional regulation, lignification, glucuronoxylan, xylan biosynthesis, cell type-specific gene regulation, Arabidopsis thaliana, stem fibers, protein-protein interaction
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review