PreprintCited by 4Bacterial Genetics and BiotechnologyHeat shock proteins researchBiochemical and Structural Characterization

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Bacterial cell surface nanoenvironment requires a specialized chaperone to activate a peptidoglycan biosynthetic enzyme

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Preprint — published as 10.1073/pnas.2414737121

Abstract

Bacillus subtilis spores are produced inside the cytosol of a mother cell. Spore surface assembly requires the SpoVK protein in the mother cell, but its function is unknown. Here, we report that SpoVK is a dedicated chaperone from a distinct higher-order clade of AAA+ ATPases that activates the peptidoglycan glycosyltransferase MurG during sporulation, even though MurG does not normally require activation by a chaperone during vegetative growth. MurG redeploys to the spore surface during sporulation, where we show that the local pH is reduced and propose that this change in cytosolic nanoenvironment necessitates a specific chaperone for proper MurG function. Further, we show that SpoVK participates in a developmental checkpoint in which improper spore surface assembly inactivates SpoVK, which leads to sporulation arrest. The AAA+ ATPase clade containing SpoVK includes other dedicated chaperones involved in secretion, cell-envelope biosynthesis, and carbohydrate metabolism, suggesting that such fine-tuning might be a widespread feature of different subcellular nanoenvironments.

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Research works printed but not linked: 68

  1. 10.1038/nature10568 · DOI · Paper page
  2. 2021, The Bacterial Hsp90 Chaperone: Cellular Functions and Mechanism of Action, Annu Rev Microbiol, 75, 719, 10.1146/annurev-micro-032421-035644 · DOI
  3. 2021, The Role of ClpB in Bacterial Stress Responses and Virulence, Front Mol Biosci, 8, 668910, 10.3389/fmolb.2021.668910 · DOI
  4. 10.1016/j.tibs.2015.07.009 · DOI
  5. 10.1016/j.cub.2020.01.044 · DOI
  6. 10.1016/j.jsb.2003.10.010 · DOI
  7. 10.1101/gr.9.1.27 · DOI
  8. 2020, Milestones in Bacillus subtilis sporulation research, Microb Cell, 8, 1
  9. A. Shen , A. N. Edwards , M. R. Sarker , D. Paredes-Sabja , Sporulation and Germination in Clostridial Pathogens. Microbiol Spectr 7 (2019). · DOI
  10. 10.1111/1758-2229.12130 · DOI
  11. 10.1038/nrmicro2921 · DOI
  12. 10.1128/JB.181.3.781-790.1999 · DOI
  13. 10.1038/ncomms7777 · DOI
  14. 10.1073/pnas.1907397116 · DOI
  15. 10.1016/j.molcel.2008.05.030 · DOI
  16. T. B. Updegrove et al., Reformulation of an extant ATPase active site to mimic ancestral GTPase activity reveals a nucleotide base requirement for function. Elife 10 (2021). · DOI
  17. 10.1073/pnas.1210554110 · DOI
  18. D. L. Popham , C. B. Bernhards , Spore Peptidoglycan. Microbiol Spectr 3 (2015). · DOI
  19. 2021, Growth and Division of the Peptidoglycan Matrix, Annu Rev Microbiol, 75, 315, 10.1146/annurev-micro-020518-120056 · DOI
  20. 2020, Insights into the Structure, Function, and Dynamics of the Bacterial Cytokinetic FtsZ-Ring, Annu Rev Biophys, 49, 309, 10.1146/annurev-biophys-121219-081703 · DOI
  21. 10.1074/jbc.REV119.010155 · DOI
  22. 10.1023/A:1017945329951 · DOI
  23. 1976, Cortex content of asporogenous mutants of Bacillus subtilis, J Bacteriol, 126, 914, 10.1128/jb.126.2.914-918.1976 · DOI
  24. 10.1128/MMBR.40.4.908-962.1976 · DOI
  25. 2018, SpoVID functions as a non-competitive hub that connects the modules for assembly of the inner and outer spore coat layers in Bacillus subtilis, Mol Microbiol, 110, 576, 10.1111/mmi.14116 · DOI
  26. 10.1111/j.1365-2958.2009.06886.x · DOI
  27. 10.1111/j.1574-6968.2009.01737.x · DOI
  28. 2022, Bacterial developmental checkpoint that directly monitors cell surface morphogenesis, Dev Cell, 57, 344, 10.1016/j.devcel.2021.12.021 · DOI
  29. 10.1128/jb.174.3.1053-1054.1992 · DOI
  30. 2015, Enzyme function is regulated by its localization, Comput Biol Chem, 59, 113, 10.1016/j.compbiolchem.2015.08.004 · DOI
  31. 10.1128/jb.174.2.575-585.1992 · DOI
  32. 10.1111/j.1365-2958.1991.tb00783.x · DOI
  33. 10.1111/1574-6968.12452 · DOI
  34. 10.1111/j.1365-2958.2007.05896.x · DOI
  35. 10.1016/j.pbiomolbio.2019.11.008 · DOI
  36. 10.1016/j.devcel.2015.08.009 · DOI
  37. 10.2174/1568005014606116 · DOI
  38. 10.1128/jb.176.8.2252-2258.1994 · DOI
  39. 10.3389/fmicb.2013.00157 · DOI
  40. 10.1016/j.mib.2010.09.014 · DOI
  41. 2022, FtsK and SpoIIIE, coordinators of chromosome segregation and envelope remodeling in bacteria, Trends Microbiol, 30, 480, 10.1016/j.tim.2021.10.002 · DOI
  42. 2022, Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes, J Bacteriol, 204, e0007922, 10.1128/jb.00079-22 · DOI
  43. 2021, How bacteria block their own biofilms, J Biol Chem, 296, 100392, 10.1016/j.jbc.2021.100392 · DOI
  44. 10.1016/j.jmb.2010.04.036 · DOI
  45. 10.1111/1574-6968.12202 · DOI
  46. 2021, Putative hexameric glycosyltransferase functional unit revealed by the crystal structure of Acinetobacter baumannii MurG, IUCrJ, 8, 574, 10.1107/S2052252521003729 · DOI
  47. 10.1016/j.chembiol.2012.01.008 · DOI
  48. 10.1126/science.1175685 · DOI
  49. 10.1016/0147-619X(84)90061-1 · DOI
  50. 10.1016/j.plasmid.2004.01.006 · DOI
  51. 10.1016/S0378-1119(96)00404-0 · DOI
  52. 10.1038/28190 · DOI
  53. 10.1101/gad.1373905 · DOI
  54. 10.1093/nar/29.14.2994 · DOI
  55. 10.1093/bioinformatics/bti125 · DOI
  56. 10.1093/nar/gki408 · DOI
  57. 10.1093/bib/bbx108 · DOI · Paper page
  58. 10.1038/srep33964 · DOI
  59. 10.1093/bioinformatics/btx469 · DOI
  60. 10.1093/nar/gkab314 · DOI · Paper page
  61. 10.1101/2021.10.04.463034 · DOI · Paper page
  62. 10.1093/bioinformatics/bty1057 · DOI · Paper page
  63. 10.1093/molbev/msaa015 · DOI · Paper page
  64. 10.1042/bj1130029 · DOI
  65. P. J. Eswara et al., An essential Staphylococcus aureus cell division protein directly regulates FtsZ dynamics. Elife 7 (2018). · DOI
  66. 10.1111/j.1365-2958.2012.08052.x · DOI
  67. 10.1128/JB.182.16.4491-4499.2000 · DOI
  68. 10.1128/jb.178.22.6451-6458.1996 · DOI

Metadata

Authors
Delerue, T., Chareyre, S., Anantharaman, V., Gilmore, M. C., Popham, D. L., Cava, F., Aravind, L., & Ramamurthi, K. S.
Affiliations
  • National Institutes of Health (US)
  • Science for Life Laboratory (SE)
  • Virginia Tech (US)
Corresponding author
  • Delerue, Thomas
  • Chareyre, Sylvia
  • Ramamurthi, Kumaran S.
Venue
Proceedings of the National Academy of Sciences
Publisher
openRxiv
Published
2023-10-06
Volume
121
Issue
43
Pages
e2414737121-e2414737121
ISSN
0027-8424 (ISSN-L)
OpenAlex
W4403419211
Cited by
4
References
1
Citations by year
2026: 3 · 2025: 1
FWCI
1.06
Type
journal article
Language
en
Open access
Licence
cc-by-nc-nd
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, public-domain)
  • DiVA at Umeå University (Umeå University) (submittedVersion, other-oa)
Funders
  • Kemper Foundation
  • Kempe Foundation
  • Knut och Alice Wallenbergs Stiftelse
  • Vetenskapsrådet
  • Umeå Universitet
  • National Institutes of Health
  • National Cancer Institute
  • National Institute of General Medical Sciences (R01GM138630)
  • U.S. National Library of Medicine
  • NHLBI Division of Intramural Research
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Heat shock proteins research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Structural Characterization
Keywords
AAA+ ATPase, MurG, forespore, sporulation, intracellular pH, molecular chaperones, developmental checkpoints, cell envelope biosynthesis

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