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HSV-1 ICP0 Dimer Domain Adopts a Novel β-barrel Fold
Open accessPreprint — published as 10.1002/prot.26673
Abstract
Infected cell protein 0 (ICP0) is an immediate-early regulatory protein of herpes simplex virus 1 (HSV-1) that possesses E3 ubiquitin ligase activity. ICP0 transactivates viral genes, in part, through its C-terminal dimer domain (residues 555-767). Deletion of this dimer domain results in reduced viral gene expression, lytic infection, and reactivation from latency. Since ICP0’s dimer domain is associated with its transactivation activity and efficient viral replication, we wanted to determine the structure of this specific domain. The C-terminus of ICP0 was purified from bacteria and analyzed by X-ray crystallography to solve its structure. Each subunit or monomer in the ICP0 dimer is composed of nine β-strands and two α-helices. Interestingly, two adjacent β-strands from one monomer “reach” into the adjacent subunit during dimer formation, generating two β-barrel-like structures. Additionally, crystallographic analyses indicate a tetramer structure is formed from two β-strands of each dimer, creating a “stacking” of the β-barrels. The structural protein database searches indicate the fold or structure adopted by the ICP0 dimer is novel. The dimer is held together by an extensive network of hydrogen bonds. Computational analyses reveal that ICP0 can either form a dimer or bind to SUMO1 via its C-terminal SUMO-interacting motifs but not both. Understanding the structure of the dimer domain will provide insights into the activities of ICP0 and, ultimately, the HSV-1 life cycle.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Metadata
- Authors
- McCloskey, E., Kashipathy, M., Cooper, A., Gao, P., Johnson, D. K., Battaile, K. P., Lovell, S., & Davido, D. J.
- Affiliations
- University of Kansas (US)
- New York Structural Biology Center (US)
- Corresponding author
- Davido, David J.
- ORCID
- Venue
- Proteins Structure Function and Bioinformatics
- Publisher
- openRxiv
- Published
- 2024-01-16
- Volume
- 92
- Issue
- 7
- Pages
- 830-841
- ISSN
- 0887-3585 (ISSN-L)
- PMC
- PMC11147711
- OpenAlex
- W4391943503
- Cited by
- 1
- References
- 1
- Citations by year
- 2025: 1
- FWCI
- 0.30
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proteins Structure Function and Bioinformatics (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
- PubMed Central (submittedVersion, cc-by-nc-nd)
- Funders
- U.S. Department of Energy (DE‐ AC02‐06CH11357, AC02‐06CH11357, 06CH11357, DE-AC02-)
- University of Kansas
- Industrial Macromolecular Crystallography Association Collaborative Access Team (DE-AC02-06CH11357)
- National Institutes of Health (DE-AC02–06CH11357, GM113117)
- Office of Science (AC02‐06CH11357, DE-AC02, 06CH11357, DE-AC02-06CH11357)
- National Institute of General Medical Sciences (P30GM110761, DE-AC02-06CH11357, P30 GM1110761, GM113117, P20GM113117, T32GM132061)
- Basic Energy Sciences (DE-AC02, DE-AC- 02-06CH11357, AC02‐06CH11357, 06CH11357)
- Topics
- Health Sciences › Medicine › Infectious Diseases › Herpesvirus Infections and Treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- ICP0, herpes simplex virus type 1, beta-barrel fold, novel protein fold, E3 ubiquitin ligase, viral transactivation, SUMO-interacting motif, protein dimerization, tetramer structure, viral gene expression, lytic infection, latency reactivation
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