Student or educator? Sign up with your school email and get 6 months of Pro free.
PreprintCited by 3Photoreceptor and optogenetics researchReceptor Mechanisms and SignalingPhotochromic and Fluorescence Chemistry

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Coral anthozoan-specific opsins employ a novel chloride counterion for spectral tuning

Open access

Preprint — published as 10.7554/elife.105451 · Paper page

Abstract

Animal opsins are G protein coupled receptors that have evolved to sense light by covalently binding a retinal chromophore via a protonated (positively charged) Schiff base. A negatively charged amino acid in the opsin, acting as a counterion, stabilizes the proton on the Schiff base, which is essential for sensitivity to visible light. In this study, we investigate the spectroscopic properties of a unique class of opsins from a reef-building coral belonging to the anthozoan-specific opsin II group (ASO-II opsins), which intriguingly lack a counterion residue at any of established sites. Our findings reveal that, unlike other known animal opsins, the protonated state of the Schiff base in visible light-sensitive ASO-II opsins is highly dependent on exogenously supplied chloride ions (Cl − ). By using structural modelling and QM/MM calculations to interpret spectroscopy data, we conclude that, in the dark state, ASO-II opsins employ environmental Cl − as their native counterion, while a nearby polar residue, Glu292 in its protonated neutral form, facilitates Cl − binding. In contrast, Glu292 plays a crucial role in maintaining the protonation state of the Schiff base in the light-activated protein, serving as the counterion in the photoproduct. Furthermore, Glu292 is involved in G protein activation of the ASO-II opsin, suggesting that this novel counterion system coordinates multiple functional properties.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2024.12.12.628111

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 1 references

Research works printed but not linked: 81

  1. 10.1007/s00338-011-0831-6 · DOI
  2. 10.1007/s00227-002-0981-8 · DOI
  3. 10.1016/j.comptc.2014.02.023 · DOI · Paper page
  4. 10.1098/rspb.2017.1769 · DOI
  5. 10.1103/PhysRevA.38.3098 · DOI · Paper page
  6. 10.1074/jbc.RA120.014118 · DOI
  7. 10.1038/s41598-022-17716-9 · DOI
  8. 10.1021/bi00755a026 · DOI
  9. 10.1038/ncomms11144 · DOI
  10. 10.1093/bioinformatics/btp348 · DOI · Paper page
  11. 10.3390/molecules27010071 · DOI
  12. 10.1093/molbev/msz189 · DOI · Paper page
  13. 10.1042/BJ20120423 · DOI
  14. 10.1038/ng0793-280 · DOI
  15. 10.1063/1.456153 · DOI · Paper page
  16. 10.1073/pnas.1204609109 · DOI
  17. 10.1007/s00338-019-01866-w · DOI
  18. 10.1002/wcms.1162 · DOI
  19. 10.1073/pnas.1721333115 · DOI
  20. 10.1093/molbev/msaa304 · DOI
  21. 10.1002/jcc.21759 · DOI · Paper page
  22. 10.1038/s41586-023-05863-6 · DOI
  23. 10.1016/s0065-3276(05)50003-0 · DOI
  24. 10.1093/gbe/evu193 · DOI
  25. 10.1016/j.tibs.2009.07.005 · DOI · Paper page
  26. 10.1074/jbc.M116.728220 · DOI
  27. 10.1038/nn1070 · DOI
  28. 10.1063/1.445869 · DOI · Paper page
  29. 10.1093/molbev/mst010 · DOI · Paper page
  30. 10.1016/0305-0491(94)00179-X · DOI
  31. 10.1038/s41598-023-44583-9 · DOI
  32. 10.1126/science.288.5470.1390 · DOI
  33. 10.1016/j.jmb.2009.11.061 · DOI
  34. 10.1073/pnas.2204341119 · DOI
  35. 10.1073/pnas.0806215105 · DOI
  36. 10.1016/j.bbabio.2013.09.003 · DOI
  37. 10.1093/bioinformatics/btz305 · DOI
  38. 10.1073/pnas.0800388105 · DOI · Paper page
  39. 10.1016/j.cell.2021.04.005 · DOI
  40. 10.1021/acs.jctc.5b00255 · DOI
  41. 10.1038/s41598-023-28476-5 · DOI
  42. 10.1093/nar/gkaa440 · DOI
  43. 10.1002/wcms.1163 · DOI
  44. 10.1021/acs.jpca.7b12332 · DOI
  45. 10.1126/science.abj6663 · DOI
  46. 10.1111/php.13372 · DOI
  47. 10.1038/s42003-019-0409-3 · DOI
  48. 10.1021/bi00493a034 · DOI · Paper page
  49. 10.1002/wcms.1606 · DOI · Paper page
  50. 10.1016/j.jbc.2025.108461 · DOI
  51. 10.1021/ct100578z · DOI
  52. 10.1016/j.cub.2018.05.055 · DOI
  53. 10.1042/bj0590122 · DOI
  54. 10.1093/gbe/evw248 · DOI
  55. 10.1006/meth.2000.0975 · DOI
  56. 10.1103/PhysRevLett.52.997 · DOI · Paper page
  57. 10.1016/0021-9991(77)90098-5 · DOI · Paper page
  58. 10.1007/s00018-022-04525-6 · DOI
  59. 10.1073/pnas.88.8.3079 · DOI
  60. 10.1073/pnas.86.21.8309 · DOI
  61. 10.1021/bi00187a002 · DOI
  62. 10.1002/anie.200802019 · DOI
  63. 10.1016/s0166-1280(03)00285-9 · DOI
  64. 10.1021/bi00476a028 · DOI
  65. 10.1038/s41586-019-1604-6 · DOI
  66. 10.1093/molbev/msaa216 · DOI
  67. 10.1021/bi401534y · DOI
  68. 10.1021/ct200133y · DOI
  69. 10.1016/S0006-3495(93)81518-2 · DOI
  70. 10.1016/j.cub.2007.11.059 · DOI
  71. 10.1186/gb-2005-6-3-213 · DOI
  72. 10.1016/0042-6989(89)90026-6 · DOI
  73. 10.1002/wmts.6 · DOI
  74. 10.1038/nsmb731 · DOI
  75. 10.1073/pnas.260349597 · DOI
  76. 10.1021/bi101020p · DOI
  77. 10.1073/pnas.0902894106 · DOI
  78. 10.3389/fmars.2015.00068 · DOI
  79. 10.1002/jcc.20702 · DOI
  80. 10.1016/j.cplett.2004.06.011 · DOI · Paper page
  81. 10.1126/science.2573154 · DOI · Paper page

Metadata

Authors
Sakai, Y., Sen, S., Sugihara, T., Kakeyama, Y., Iwasaki, M., Schertler, G. F. X., Deupi, X., Koyanagi, M., & Terakita, A.
Affiliations
  • Osaka Metropolitan University (JP)
  • SIB Swiss Institute of Bioinformatics (CH)
  • Paul Scherrer Institute (CH)
Corresponding author
Terakita, Akihisa
Venue
eLife
Publisher
openRxiv
Published
2024-12-12
Volume
14
ISSN
2050-084X (ISSN-L)
OpenAlex
W4413905433
Cited by
3
References
1
Citations by year
2026: 3
FWCI
1.18
Type
journal article
Language
en
Open access
Locations
  • eLife (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
Funders
  • Japanese Ministry of Education, Culture, Sports, Science and Technology Grants-in-Aid for Scientific Research (23H02516, 22H02663, JP20J01841)
  • Japan Science and Technology Agency Core Research for Evolutional Science and Technology (JPMJCR1753)
  • European Union's Horizon 2020 research and innovation programme (grant agreement 951644, Marie Skłodowska-Curie grant agreement 884104)
Topics
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Photoreceptor and optogenetics research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
  • Physical Sciences › Materials Science › Materials Chemistry › Photochromic and Fluorescence Chemistry
Keywords
chloride counterion, Schiff base protonation, retinal chromophore, spectral tuning, G protein activation, photoproducts, G protein-coupled receptors, reef-building corals, photosensitivity

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: Coral anthozoan-specific opsins employ a novel chloride counterion for spectral tuning. https://app.cochat.ai/papers/10.1101/2024.12.12.628111
The paper
Sakai, Y., Sen, S., Sugihara, T., Kakeyama, Y., Iwasaki, M., Schertler, G. F. X., Deupi, X., Koyanagi, M., & Terakita, A. (2024). Coral anthozoan-specific opsins employ a novel chloride counterion for spectral tuning. eLife. https://doi.org/10.1101/2024.12.12.628111

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.