PreprintCited by 4Cardiomyopathy and Myosin StudiesRNA and protein synthesis mechanismsGenomics and Rare Diseases

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Pathogenetic mechanisms of muscle-specific ribosomes in dilated cardiomyopathy

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Murphy, Michael R., Ganapathi, Mythily, Lee, Teresa M., Fisher, Joshua M., Patel, Megha V., Jayakar, Parul, Buchanan, Amanda, Rippert, Alyssa L, Ahrens-Nicklas, Rebecca C., Nair, Divya, Soni, Rajesh K., Yin, Yue, Yang, Feiyue, Reilly, Muredach P., Chung, Wendy K., Wu, Xuebing·2025·Nature Cardiovascular Research

Preprint — published as 10.1038/s44161-025-00761-8

Abstract

The heart employs a specialized ribosome in its muscle cells to translate genetic information into proteins, a fundamental adaptation with an elusive physiological role 1–3 . Its significance is underscored by the discovery of neonatal patients suffering from often fatal heart failure caused by severe dilated cardiomyopathy when both copies of the gene RPL3L are mutated 4–9 . RPL3L is a muscle-specific paralog 1–3 of the ubiquitous ribosomal protein L3 (RPL3), which makes the closest contact of any protein to the ribosome’s RNA-based catalytic center 10 . RPL3L -linked heart failure represents the only known human disease associated with tissue-specific ribosomes, yet the underlying pathogenetic mechanisms remain poorly understood. Intriguingly, disease is linked to a large number of mostly missense variants in RPL3L , and RPL3L -knockout resulted in no severe heart defect in either human or mice 3, 11–13 , challenging the prevailing view that autosomal recessive diseases are caused by loss-of-function mutations. Here, we report three new cases of RPL3L -linked severe neonatal heart failure and present a unifying pathogenetic mechanism by which a large number of variants in the muscle-specific ribosome led to disease. Specifically, affected families often carry one of two recurrent toxic gain-of-function variants alongside a family-specific putative loss-of-function variant. While the non-recurrent variants often trigger partial compensation of RPL3 similar to Rpl3l -knockout mice, both recurrent variants exhibit increased affinity for the RPL3/RPL3L chaperone GRWD1 14–16 and 60S biogenesis factors, sequester 28S rRNA in the nucleus, disrupt ribosome biogenesis, and trigger severe cellular toxicity that extends beyond the loss of ribosomes. These findings provide critical insights for genetic screening and therapeutic development of neonatal heart failure. Our results suggest that gain-of-toxicity mechanisms may be more prevalent in autosomal recessive diseases, and a combination of gain-of-toxicity and loss-of-function mechanisms could underlie many diseases involving genes with paralogs.

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Metadata

Authors
Murphy, M. R., Ganapathi, M., Lee, T. M., Fisher, J. M., Patel, M. V., Jayakar, P., Buchanan, A., Rippert, A. L., Ahrens-Nicklas, R. C., Nair, D., Soni, R. K., Yin, Y., Yang, F., Reilly, M. P., Chung, W. K., & Wu, X.
Affiliations
  • Columbia University Irving Medical Center (US)
  • Medical College of Wisconsin (US)
  • Miami Children's Hospital (US)
  • Illumina (United States) (US)
  • Children's Hospital of Philadelphia (US)
  • Division of Human Genetics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
  • Herbert Irving Comprehensive Cancer Center (US)
  • Boston Children's Hospital (US)
Corresponding author
  • Murphy, Michael R.
  • Wu, Xuebing
Venue
Nature Cardiovascular Research
Publisher
openRxiv
Published
2025-01-03
Volume
5
Issue
1
Pages
51-66
ISSN
2731-0590 (ISSN-L)
OpenAlex
W7118251413
Cited by
4
References
1
Citations by year
2026: 1 · 2025: 3
FWCI
5.00
Type
journal article
Language
en
Open access
Locations
  • Nature Cardiovascular Research (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed Central (submittedVersion, cc-by-nc-nd)
Funders
  • American Heart Association (P30CA013696)
  • Wellcome Trust
  • Department of Biotechnology, Ministry of Science and Technology, India
  • The Wellcome Trust DBT India Alliance (IA/CRC/20/1/600002)
  • National Institutes of Health (1s10od020056-01, 1s10od030282-01a1, UL1TR001873)
  • Irving Medical Center, Columbia University (P30-CA013696, UL1TR001873)
  • National Heart, Lung, and Blood Institute (R01HL053392, S10OD020056, R01HL087000, R13HL087708, F31HL094100, R01HL171664)
  • NIH Office of the Director
  • National Cancer Institute (P30CA013696)
Topics
  • Health Sciences › Medicine › Cardiology and Cardiovascular Medicine › Cardiomyopathy and Myosin Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
Keywords
dilated cardiomyopathy, ribosomal protein L3, ribosomal protein mutations, missense mutations, rRNA processing, ribosome biogenesis, heart failure, genotype-phenotype correlation, isogenic cell models, genetic screening

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