The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
An essential periplasmic protein coordinates lipid trafficking and is required for asymmetric polar growth in mycobacteria
Open accessPreprint — published as 10.7554/elife.80395
Abstract
Mycobacteria, including the human pathogen Mycobacterium tuberculosis , grow by inserting new cell wall material at their poles. This process and that of division are asymmetric, producing a phenotypically heterogeneous population of cells that respond non-uniformly to stress (Aldridge et al., 2012; Rego et al., 2017; Richardson et al., 2016). Surprisingly, deletion of a single gene – lamA – leads to more symmetry, and to a population of cells that is more uniformly killed by antibiotics (Rego et al., 2017). How does LamA create asymmetry? Here, using a combination of quantitative time-lapse imaging, bacterial genetics, and lipid profiling, we find that LamA recruits essential proteins involved in cell wall synthesis to one side of the cell – the old pole. One of these proteins, MSMEG_0317, here renamed PgfA, was of unknown function. We show that PgfA is a periplasmic protein that interacts with MmpL3, an essential transporter that flips mycolic acids in the form of trehalose monomycolate (TMM), across the plasma membrane. PgfA interacts with a TMM analog suggesting a direct role in TMM transport. Yet our data point to a broader function as well, as cells with altered PgfA levels have differences in the abundance of other lipids and are differentially reliant on those lipids for survival. Overexpression of PgfA, but not MmpL3, restores growth at the old poles in cells missing lamA . Together, our results suggest that PgfA is a key regulator of polar growth and cell envelope composition in mycobacteria, and that the LamA-mediated recruitment of this protein to one side of the cell is a required step in the establishment of cellular asymmetry.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Hoffmann, C., Leis, A., Niederweis, M., Plitzko, J. M., & Engelhardt, H. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0709530105 · Cited by 596
Asymmetry and Aging of Mycobacterial Cells Lead to Variable Growth and Antibiotic Susceptibility
Aldridge, B. B., Fernandez-Suarez, M., Heller, D., Ambravaneswaran, V., Irimia, D., Toner, M., & Fortune, S. M. (2012) · Science · doi:10.1126/science.1216166 · Cited by 454
Bacterial Growth and Cell Division: a Mycobacterial Perspective
Hett, E. C., & Rubin, E. J. (2008) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00028-07 · Cited by 408
Deletion of a mycobacterial divisome factor collapses single-cell phenotypic heterogeneity
Rego, E. H., Audette, R. E., & Rubin, E. J. (2017) · Nature · doi:10.1038/nature22361 · Cited by 186
Self-citationPeptidoglycan precursor synthesis along the sidewall of pole-growing mycobacteria
García-Heredia, A., Pohane, A. A., Melzer, E. S., Carr, C. R., Fiolek, T. J., Rundell, S. R., Lim, H. C., Wagner, J. C., Morita, Y. S., Swarts, B. M., et al. (2018) · eLife · doi:10.7554/elife.37243 · Cited by 115
Self-citationTwo Accessory Proteins Govern MmpL3 Mycolic Acid Transport in Mycobacteria
Fay, A., Czudnochowski, N., Rock, J. M., Johnson, J. R., Krogan, N. J., Rosenberg, O., & Glickman, M. S. (2019) · mBio · doi:10.1128/mbio.00850-19 · Cited by 65
Cell Walls and Membranes of Actinobacteria
Rahlwes, K. C., Sparks, I. L., & Morita, Y. S. (2019) · Subcellular Biochemistry · doi:10.1007/978-3-030-18768-2_13 · Cited by 65
Self-citationDragset, M. S., Ioerger, T. R., Zhang, Y. J., Mærk, M., Ginbot, Z., Sacchettini, J. C., Flo, T. H., Rubin, E. J., & Steigedal, M. (2019) · Scientific Reports · doi:10.1038/s41598-019-47905-y · Cited by 49
Flagged first, then by citations
Research works printed but not linked: 46
- 2018, Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109, BMC Biochem, 19, 3, 10.1186/s12858-018-0093-9 · DOI
- CRyPTIC Consortium, 2021, Cryo-EM structure and resistance landscape of M. tuberculosis MmpL3: An emergent therapeutic target, Structure, 29, 1182, 10.1016/j.str.2021.06.013 · DOI · Paper page
- 10.1074/jbc.M114.581579 · DOI
- 10.1128/microbiolspec.GPP3-2018 · DOI
- 10.1038/s41598-019-47159-8 · DOI
- 10.1074/jbc.M800222200 · DOI
- 2021, Genome-wide gene expression tuning reveals diverse vulnerabilities of M, tuberculosis. Cell, 184, 4579
- 10.1074/jbc.M116.772202 · DOI
- 2017, Dissecting the mycobacterial cell envelope and defining the composition of the native mycomembrane, Scientific Reports, 7, 12807, 10.1038/s41598-017-12718-4 · DOI
- 2017, Essentiality of mmpL3 and impact of its silencing on Mycobacterium tuberculosis gene expression, Scientific Reports, 7, 43495, 10.1038/srep43495 · DOI
- 10.1128/mBio.02133-16 · DOI
- 2015, TRANSIT - A Software Tool for Himar1 TnSeq Analysis, PLOS Computational Biology, 11, e1004401, 10.1371/journal.pcbi.1004401 · DOI
- 10.1128/mBio.00850-19 · DOI · Paper page
- 2018, Phosphorylation-dependent activation of the cell wall synthase PBP2a in Streptococcus pneumoniae by MacP, Proceedings of the National Academy of Sciences - PNAS, 115, 2812, 10.1073/pnas.1715218115 · DOI
- 10.1101/cshperspect.a021105 · DOI
- 10.1146/annurev-micro-091014-104121 · DOI
- 2020, Photoactivatable Glycolipid Probes for Identifying Mycolate-Protein Interactions in Live Mycobacteria, J. Am. Chem. Soc., 142, 7725, 10.1021/jacs.0c01065 · DOI
- 10.1038/nrmicro3299 · DOI
- 10.1128/AAC.20.3.401 · DOI
- 10.1128/AAC.05270-11 · DOI
- 10.1046/j.1365-2958.2000.01695.x · DOI
- Martini, M.C. , Zhou, Y. , Sun, H. , and Shell, S.S. (2019). Defining the Transcriptional and Post-transcriptional Landscapes of Mycobacterium smegmatis in Aerobic Growth and Hypoxia. Front Microbiol 10, · DOI
- 10.1016/j.jsb.2005.07.007 · DOI
- 10.1128/AAC.39.11.2484 · DOI
- 10.1074/jbc.RA119.008585 · DOI
- 10.1016/j.cell.2010.11.037 · DOI
- 10.1016/S0378-1097(03)00823-1 · DOI
- 2022, Crystal structure of the putative cell-wall lipoglycan biosynthesis protein LmcA from Mycobacterium smegmatis, Acta Crystallogr. D. Struct. Biol., 78, 494, 10.1107/S2059798322001772 · DOI
- Rahlwes, K.C. , Puffal, J. , and Morita, Y.S. (2019). Purification and Analysis of Mycobacterial Phosphatidylinositol Mannosides, Lipomannan, and Lipoarabinomannan. In Bacterial Polysaccharides: Methods and Protocols, Brockhausen, Inka ed., (New York, NY: Springer New York) pp. 59–75. · DOI
- 10.1073/pnas.1600372113 · DOI
- 2017, Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform, Nat. Microbiol., 2, 16274, 10.1038/nmicrobiol.2016.274 · DOI · Paper page
- 10.1074/jbc.M109.077297 · DOI
- 2013, Identification and characterization of the channel-forming protein in the cell wall of Corynebacterium amycolatum, Biochimica Et Biophysica Acta (BBA) - Biomembranes, 1828, 2574, 10.1016/j.bbamem.2013.06.024 · DOI
- 2021, Structures of the mycobacterial membrane protein MmpL3 reveal its mechanism of lipid transport, PLoS Biol., 19, e3001370, 10.1371/journal.pbio.3001370 · DOI
- 2019, MmpL3 is a lipid transporter that binds trehalose monomycolate and phosphatidylethanolamine, Proceedings of the National Academy of Sciences - PNAS, 116, 11241, 10.1073/pnas.1901346116 · DOI · Paper page
- 10.1128/AAC.05708-11 · DOI
- 10.1016/j.cell.2010.11.038 · DOI
- 2021, Mycobacterial Membrane Protein Large 3 (MmpL3) Inhibitors: A Promising Approach to Combat Tuberculosis, ChemMedChem, 16, 3136, 10.1002/cmdc.202100359 · DOI
- 10.1038/nmeth996 · DOI
- 10.1093/NAR/GKAB1061 · DOI · Paper page
- 10.1128/JB.00649-17 · DOI
- Wuo, M.G. , Dulberger, C.L. , Brown, R.A. , Sturm, A. , Ultee, E. , Bloom-Ackermann, Z. , Choi, C. , Garner, E.C. , Briegel, A. , Hung, D.T. , Rubin, E.J. , and Kiessling, L.L. (2022). Antibiotic action revealed by real-time imaging of the mycobacterial membrane. · DOI
- 10.1073/pnas.1700062114 · DOI · Paper page
- 10.1371/journal.ppat.1002946 · DOI
- 10.1038/nmeth.4193 · DOI
- 10.1128/JB.01919-07 · DOI · Paper page
Cited by
Sorted by citations
de Wet, T. J., Winkler, K. R., Mhlanga, M., Mizrahi, V., & Warner, D. F. (2020) · eLife · doi:10.7554/elife.60083 · Cited by 79
Metadata
- Authors
- Gupta, K. R., Gwin, C. M., Rahlwes, K. C., Biegas, K. J., Wang, C., Park, J. H., Liu, J., Swarts, B. M., Morita, Y. S., & Rego, E. H.
- Affiliations
- Yale University (US)
- University of Massachusetts Amherst (US)
- Central Michigan University (US)
- Corresponding author
- Rego, E. Hesper
- Venue
- bioRxiv (Cold Spring Harbor Laboratory)
- Publisher
- openRxiv
- Published
- 2019-05-09
- OpenAlex
- W2944219925
- Cited by
- 1
- References
- 9
- Citations by year
- 2020: 1
- Type
- posted content
- Language
- en
- Open access
- green
- doi.org
- Locations
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- Funders
- National Science Foundation (1654408, CAREER)
- National Institutes of Health
- Topics
- Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
- Keywords
- Mycobacterium tuberculosis, polar growth, asymmetric cell division, lamas, MmpL3, trehalose monomycolate, periplasmic proteins, lipid trafficking, cell wall biosynthesis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review