Epigenetic Regulation in Plants

Pikaard, C. S., Mittelsten Scheid, O.·2014·Cold Spring Harbor Perspectives in Biology

Cited by (445)

Items 201–300 of 445

  1. Insights into the Role of Transcriptional Gene Silencing in Response to Herbicide-Treatments in Arabidopsis thaliana
    Catarine Markus, Aleš Pečinka, Aldo Merotto · 2021 · International Journal of Molecular Sciences
  2. Microspore embryogenesis induction by mannitol and TSA results in a complex regulation of epigenetic dynamics and gene expression in bread wheat
    Isabel Valero-Rubira, A. M. Castillo, Marı́a A. Burrell, M. Pilar Vallés · 2023 · Frontiers in Plant Science
  3. Analyses of genes encoding the Glycogen Synthase Kinases in rice and Arabidopsis reveal mechanisms which regulate their expression during development and responses to abiotic stresses
    Sunny Ahmar, Karolina Zolkiewicz, Damian Gruszka · 2023 · Plant Science
  4. Arabidopsis thaliana: a powerful model organism to explore histone modifications and their upstream regulations
    Yu Pu Yang, Sihan Wang, Ziqin Wang, Renwei Gao, Joohyun Lee · 2023 · Epigenetics
  5. The NRPD1 N-terminus contains a Pol IV-specific motif that is critical for genome surveillance in Arabidopsis
    Laura Ferrafiat, David Pflieger, Jasleen Singh, Michael Thieme, Marcel Böhrer, Christophe Himber, Aude Gerbaud, Etienne Bucher, Craig S. Pikaard, Todd Blevins · 2019 · Nucleic Acids Research
  6. Endosperm and Seed Transcriptomes Reveal Possible Roles for Small RNA Pathways in Wild Tomato Hybrid Seed Failure
    Ana Marcela Florez‐Rueda, Flurin Fiscalini, Morgane Roth, Ueli Grossniklaus, Thomas Städler · 2021 · Genome Biology and Evolution
  7. Versatile and multifaceted CRISPR/Cas gene editing tool for plant research
    Prashant K. Pandey, Teagen D. Quilichini, Neha Vaid, Peng Gao, Daoquan Xiang, Raju Datla · 2019 · Seminars in Cell and Developmental Biology
  8. Epigenetic Patterns and Geographical Parthenogenesis in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
    Christoph C. F. Schinkel, Eleni Syngelaki, Bernhard Kirchheimer, Stefan Dullinger, Simone Klatt, Elvira Hörandl · 2020 · International Journal of Molecular Sciences
  9. Northern Blotting Techniques for Small RNAs
    Todd Blevins · 2016 · Methods in molecular biology
  10. Retrograde signals control dynamic changes to the chromatin state at photosynthesis-associated loci
    Martí Quevedo, Ivona Kubalová, Alexis Brun, Luis Cervela-Cardona, Elena Monte, Åsa Strand · 2025 · Nature Communications
  11. Differential Methylation Patterns in Apomictic vs. Sexual Genotypes of the Diplosporous Grass Eragrostis curvula
    José Carballo, Diego Zappacosta, Gianpiero Marconi, Jimena Gallardo, Marco Di Marsico, Cristian Andres Gallo, Mario Cáccamo, Emidio Albertini, Viviana C. Echenique · 2021 · Plants
  12. Epigenetic mechanisms affect the curled leaf phenotype in the hypomethylated mutant of
    Ivano Forgione, Antonella Muto, Magdalena Wołoszyńska, Adriana Ada Ceverista Chiappetta, Michele Ferrari, Mieke Van Lijsebettens, Maria Beatrice Bitonti, Leonardo Bruno · 2022 · Plant Science
  13. Nitric Oxide Implication in Potato Immunity to Phytophthora infestans via Modifications of Histone H3/H4 Methylation Patterns on Defense Genes
    Andżelika Drozda, Barbara Kurpisz, Magdalena Arasimowicz‐Jelonek, Daniel Kuźnicki, Przemysław Jagodzik, Yufeng Guan, Jolanta Floryszak‐Wieczorek · 2022 · International Journal of Molecular Sciences
  14. The DNA methylation landscape of the root‐knot nematode‐induced pseudo‐organ, the gall, in Arabidopsis, is dynamic, contrasting over time, and critically important for successful parasitism
    Ana Cláudia Silva, Virginia Ruíz‐Ferrer, Sebastian Müller, Clément Pellegrin, Patricia Abril‐Urías, Ángela Martínez‐Gómez, Almudena Gómez‐Rojas, Eduardo Berenguer, Pilar S. Testillano, María Fe Andrés et al. · 2022 · New Phytologist
  15. The genetic basis of epigenetic variation and its consequences for adaptation
    Pierre Baduel, Eriko Sasaki · 2023 · Current Opinion in Plant Biology
  16. Epigenetic mechanisms and their role in plant development
    Maria A. Lebedeva, Varvara E. Tvorogova, O. N. Tikhodeyev · 2016 · Russian Journal of Genetics
  17. Applying Epigenetics in Plant Breeding: Balancing Genome Stability and Phenotypic Plasticity
    Estelle Jaligot, Alain Rival · 2015 · Springer eBooks
  18. Epigenetic Regulation of Salt Stress Responses in Rice: Mechanisms and Prospects for Enhancing Tolerance
    Emanuela Talarico, Eleonora Greco, Francesco Guarasci, Fabrizio Araniti, Adriana Ada Ceverista Chiappetta, Leonardo Bruno · 2025 · Epigenomes
  19. Organ-specific characteristics govern the relationship between histone code dynamics and transcriptional reprogramming during nitrogen response in tomato
    Russell Julian, Ryan M. Patrick, Ying Li · 2023 · Communications Biology
  20. DNA methylation changes in clonally propagated oil palm
    Norashikin Sarpan, Elizaveta Taranenko, Siew‐Eng Ooi, Eng‐Ti Leslie Low, Alejandro Palacios-Espinoza, Tatiana V. Tatarinova, Meilina Ong‐Abdullah · 2020 · Plant Cell Reports
  21. Why are tall-statured energy grasses of polyploid species complexes potentially invasive? A review of their genetic variation patterns and evolutionary plasticity
    Carla Lambertini · 2019 · Biological Invasions
  22. Epigenetics in Forest Trees: Keep Calm and Carry On
    María Teresa Doménech Carbó, Carolina Iturra, Bárbara Correia, Francisco Colina, Mónica Meijón, José Manuel Álvarez, María Jesús Cañal, Rodrigo Hasbún, Glória Pinto, Luís Valledor · 2019 · Springer eBooks
  23. Effect of aluminium (Al) on the brain cells of the rat.
    K. S. Jagannatha Rao · 1992 · PubMed
  24. Using targeted genome methylation for crop improvement
    Zhibo Wang, Rebecca S Bart · 2025 · Journal of Experimental Botany
  25. Transgenerational Perpetuation of CHS Gene Expression and DNA Methylation Status Induced by Short Oligodeoxynucleotides in Flax (Linum usitatissimum)
    Magdalena Działo, Jan Szopa, Agata Hnitecka, Magdalena Żuk · 2019 · International Journal of Molecular Sciences
  26. Modifications in Biomacromolecules
    Xianquan Zhan, Atena Jabbari · 2022 · Biochemistry
  27. Transcriptomics Analysis Reveals a More Refined Regulation Mechanism of Methylation in a Drought-Tolerant Variety of Potato
    Zhenzhen Bi, Yihao Wang, Pengcheng Li, Chengju Li, Yindu Liu, Chao Sun, Panfeng Yao, Yuhui Liu, Zhen Liu, Jiangping Bai · 2022 · Genes
  28. Epigenetic Regulations of Fleshy Fruit Development and Ripening and Their Potential Applications to Breeding Strategies
    Etienne Bucher, Junhua Kong, Emeline Teyssier, Philippe Gallusci · 2018 · Advances in botanical research
  29. Filter-Aided Sample Preparation Procedure for Mass Spectrometric Analysis of Plant Histones
    Dominika Ledvinová, Kamil Mikulášek, Hana Kuchaříková, Sylva Brabencová, Miloslava Fojtová, Zbyněk Zdráhal, Gabriela Lochmanová · 2018 · Frontiers in Plant Science
  30. Biological and Molecular Control Tools in Plant Defense
    Maria L. Pappas, Paula C. Baptista, George D. Broufas, Athanasios Dalakouras, Wafa Djobbi, Vı́ctor Flors, Meriem Msaad Guerfali, Slimane Khayi, Rachid Mentag, Victoria Pastor et al. · 2020 · Progress in biological control
  31. A combined transcriptome - miRNAome approach revealed that a kinesin gene is differentially targeted by a novel miRNA in an apomictic genotype of Eragrostis curvula
    María Cielo Pasten, José Carballo, Jimena Gallardo, Diego Zappacosta, Juan Pablo Selva, Juan Manuel Rodrigo, Viviana C. Echenique, Ingrid Garbus · 2022 · Frontiers in Plant Science
  32. Insights into the Molecular Basis of Fruit Development in Prunus Species
    Germán Ortuño-Hernández, Paula Sandoval-Belmar, David Ruiz, Pedro Martínez-Gómez, Claudio Meneses, Juan Alfonso Salazar · 2025 · Plant Molecular Biology Reporter
  33. DNA methylation balance is involved in anthocyanin accumulation during Vaccinium corymbosum fruit ripening
    Lei Yu, Ya Zhou, Yihui Zhang, Wei Yong Liu, Yongqiang Li, Mei Lü, Chaoyang Fan, Nan Shao, Yang Li, Weidong Guo · 2020 · Journal of Berry Research
  34. Effects of global climate change on regeneration of invasive plant species from seeds
    Cynthia D. Huebner · 2022 · Elsevier eBooks
  35. Covalent RNA modifications and their budding crosstalk with plant epigenetic processes
    Garima Bhatia, Wil Prall, Bishwas Sharma, Brian D. Gregory · 2022 · Current Opinion in Plant Biology
  36. Review: Omics and Strategic Yield Improvement in Oil Crops
    Huey Fang Teh, Bee Keat Neoh, Nalisha Ithnin, Leona Daniela Jeffery Daim, Tony Eng Keong Ooi, David Ross Appleton · 2017 · Journal of the American Oil Chemists Society
  37. The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth
    Marta Malinowska, István Nagy, Cornelis A. M. Wagemaker, Anja Karine Ruud, Simon Fiil Svane, Kristian Thorup‐Kristensen, Christian S. Jensen, Birger Eriksen, Lene Krusell, Ahmed Jahoor et al. · 2020 · The Plant Genome
  38. Genetic, Epigenetic, and Hormonal Regulation of Fruit Development and Ripening inCapsicumL. Species
    Ajay Kumar, Sushil Kumar, Thattantavide Anju, Nirala Ramchiary · 2021 · Annual Plant Reviews online
  39. Plant Defense Mechanisms
    Josphert N. Kimatu · 2021 · IntechOpen eBooks
  40. Using Gene Editing Strategies for Wheat Improvement
    Domenica Nigro, Mark A. Smedley, Francesco Camerlengo, Şadiye Hayta · 2023 · Springer eBooks
  41. Genomic and Epigenomic Changes in the Progeny of Cold-Stressed Arabidopsis thaliana Plants
    Ashif Rahman, Narendra Singh Yadav, Boseon Byeon, Yaroslav Ilnytskyy, Igor Kovalchuk · 2024 · International Journal of Molecular Sciences
  42. Effect of Paper-Bagging on Apple Skin Patterning Associated with MdMYB10 Promoter Methylation
    Hye Jeong Cho, A Reum Han, Cheol Woo Choi · 2022 · International Journal of Molecular Sciences
  43. Genome-wide analysis of histone deacetylases in Apple and functional analysis of MdHDA6 in drought and salt stress responses
    Caixia Wang, Jinjiao Yan, Bichun Hu, Ruifeng Wang, Bingjie Miao, Fanman Zeng, Fengwang Ma, Qingmei Guan, Jidi Xu · 2023 · Scientia Horticulturae
  44. Potential using of transgenerational resistance against common bacterial blight in Phaseolus vulgaris
    Ahmet Akköprü · 2019 · Crop Protection
  45. Complex molecular mechanisms determine fitness of plants to biotic and abiotic stresses
    Ashish Prasad, Muthappa Senthil‐Kumar, Manoj Prasad · 2021 · Journal of Plant Biochemistry and Biotechnology
  46. S-Nitrosylation of Nuclear Proteins
    Izabella Kovács, Alexandra Ageeva, Eva-Esther König, Christian Lindermayr · 2016 · Advances in botanical research
  47. Epigenomic diversification within the genus Lupinus
    Karolina Susek, Agnieszka Brąszewska-Zalewska, Adam J. Bewick, Robert Hasterok, Robert J. Schmitz, B. Naganowska · 2017 · PLoS ONE
  48. The applicability of the European GMO legislation to epigenetically modified organisms
    Timo Faltus · 2023 · Frontiers in Bioengineering and Biotechnology
  49. Genome-wide DNA methylation and their transgenerational pattern differ in Arabidopsis thaliana populations originated along the elevation of West Himalaya
    Akanksha Singh, Ashwani Kumar Verma, Sunil Kumar, Sumit Kumar Bag, Sribash Roy · 2024 · BMC Plant Biology
  50. Impact of water stress to plant epigenetic mechanisms in stress and adaptation
    Tarik Aanniz, Aicha El Baaboua, Sara Aboulaghras, Abdelhakim Bouyahya, Taoufiq Benali, Abdelaali Balahbib, Nasreddine El Omari, Monica Butnariu, Khursheed Muzammil, Krishna Kumar Yadav et al. · 2025 · Physiologia Plantarum
  51. A chromosome-scale genome assembly and epigenomic profiling reveal temperature-dependent histone methylation in iridoid biosynthesis regulation in Scrophularia ningpoensis
    Qing Xu, Chang Liu, Bin Li, Kewei Tian, Lei You, Li Xie, Huang Wang, Meide Zhang, Wuxian Zhou, Yonghong Zhang et al. · 2025 · Horticulture Research
  52. Principal Component Analysis and Cluster Analysis of Hydroponic Adaptation Potential in Different Pakchoi (Brassica campestris ssp. Chinensis) Parent Materials
    Jiawei Cui, Xiuping Zhan, Qixu Wang, Donghe Zhang, Dalu Li, Xiaofeng Li, Lu Gao, Hanji Zhu, Liying Chang, Jianyong Li et al. · 2025 · Horticulturae
  53. Different reprogramming propensities in plants and mammals: Are small variations in the core network wirings responsible?
    Victor Olariu, Julia Nilsson, Henrik Jönsson, Carsten Peterson · 2017 · PLoS ONE
  54. The Pol IV largest subunit CTD quantitatively affects siRNA levels guiding RNA-directed DNA methylation
    Jered M. Wendte, Jeremy R. Haag, Olga Pontes, Jasleen Singh, Sara Metcalf, Craig S. Pikaard · 2019 · Nucleic Acids Research
  55. The Arabidopsis JMJ29 Protein Controls Circadian Oscillation through Diurnal Histone Demethylation at the CCA1 and PRR9 Loci
    Hong Gil Lee, Pil Joon Seo · 2021 · Genes
  56. Plant biotechnology for sustainable agriculture and food safety
    Alisdair Robert Fernie, Uwe Sonnewald · 2021 · Journal of Plant Physiology
  57. PHD type zinc finger protein PFP represses flowering by modulating FLC expression in Arabidopsis thaliana
    Yuri Yokoyama, Satoru Kobayashi, Shin‐ichiro Kidou · 2019 · Plant Growth Regulation
  58. Transcriptional response of cultivated peanut (Arachis hypogaea L.) roots to salt stress and the role of DNA methylation
    Shree Prakash Pandey, Chen Chen, Shivam Singh, Jalak N. Maniar, Avinash Mishra, Suman Bakshi, Vinay Kumar Mishra, Sandeep Sharma · 2025 · Plant Cell Reports
  59. An Eruption of LTR Retrotransposons in the Autopolyploid Genomes of Chrysanthemum nankingense (Asteraceae)
    Jun He, Zhongyu Yu, Jiafu Jiang, Sumei Chen, Weimin Fang, Zhiyong Guan, Yuan Liao, Zhenxing Wang, Fadi Chen, Haibin Wang · 2022 · Plants
  60. Comparative transcriptomics analysis reveals defense mechanisms of Manihot esculenta Crantz against Sri Lanka Cassava MosaicVirus
    Somruthai Chaowongdee, Nattachai Vannatim, Srihunsa Malichan, Nattakorn Kuncharoen, Pumipat Tongyoo, Wanwisa Siriwan · 2024 · BMC Genomics
  61. Genomic variation across distribution of Micro-Tom, a model cultivar of tomato ( Solanum lycopersicum )
    Hideki Nagasaki, Kenta Shirasawa, Ken Hoshikawa, Sachiko Isobe, Hiroshi Ezura, Koh Aoki, Hideki Hirakawa · 2024 · DNA Research
  62. Analysis of Cytosine Methylation in Genomic DNA of Solanum × michoacanum (+) S. tuberosum Somatic Hybrids
    Paulina Smyda‐Dajmund, Jadwiga Śliwka, Clizia Villano, Marta Brylińska, Riccardo Aversano, Piotr Tomasz Bednarek, Domenico Carputo, Ewa Zimnoch‐Guzowska · 2021 · Agronomy
  63. Genome Maintenance Mechanisms at the Chromatin Level
    Hirotomo Takatsuka, Atsushi Shibata, Masaaki Umeda · 2021 · International Journal of Molecular Sciences
  64. Drought Stress and Chromatin: An Epigenetic Perspective
    Asif Ali Khan, Gaurav Zinta · 2016 · Springer eBooks
  65. Gene Function Rather than Reproductive Mode Drives the Evolution of RNA Helicases in Sexual and Apomictic Boechera
    Markus Kiefer, Berit H Nauerth, Christopher Volkert, David Ibberson, Anna Loreth, Anja Schmidt · 2020 · Genome Biology and Evolution
  66. Epigenome editing strategies for plants: a mini review
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  67. Enhancing tiny millets through genome editing: current status and future prospects
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  68. Putrescine treatment has a higher effect on 5mC DNA methylation profile of wheat leaves under white than under blue light conditions
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  69. Histone deacetylase complex 1 facilitates hypocotyl elongation by attenuating acetylation and transcription via a PIF4-dependent process
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  70. Evolutionary seed ecology of heteromorphic Amaranthaceae
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  71. Analyses of gene copy number variation in diverse epigenetic regulatory gene families across plants: Increased copy numbers of BRUSHY1/TONSOKU/MGOUN3 (BRU1/TSK/MGO3) and SILENCING DEFECTIVE 3 (SDE3) in long-lived trees
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  72. Plant Epigenomics
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  73. Epigenetics in plant breeding
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  74. Epigenetic Regulation by Noncoding RNAs in Plant Development
    Yu‐Chan Zhang, Yujie Chen · 2017 · RNA technologies
  75. The Potential Role of Epigenetics in Aquaculture
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  76. Genome Structure of Triticeae Species
    Moshe Feldman, Avraham A. Levy · 2023 · Springer eBooks
  77. Unveiling the role of epigenetics in leaf senescence: a comparative study to identify different epigenetic regulations of senescence types in barley leaves
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  78. The emerging trends and prospects of DNA methylomics for abiotic stress tolerance in legumes
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  79. Proteomic Studies: Contribution to Understanding Plant Salinity Stress Response
    Md. Sanower Hossain · 2020 · Global Journal Of Botanical Science
  80. Effect of transgenerational environmental condition on genetics parameters of Italian Brown Swiss
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  81. Minimal requirements for the epigenetic inheritance of engineered silent chromatin domains
    Andy H. Yuan, Danesh Moazed · 2024 · Proceedings of the National Academy of Sciences
  82. Mimulus sRNAs Are Wound Responsive and Associated with Transgenerationally Plastic Genes but Rarely Both
    Jack M. Colicchio, John K. Kelly, Lena C. Hileman · 2020 · International Journal of Molecular Sciences
  83. Plant histone modifications in response to cold stress
    Tae Kyung Hyun · 2022 · Botanica Serbica
  84. Analysis of Whole-Transcriptome RNA-Seq Data Reveals the Involvement of Alternative Splicing in the Drought Response of Glycyrrhiza uralensis
    Guozhi Li, Dengxian Xu, Gang Huang, Quan Bi, Mao Yang, Haitao Shen, Hailiang Liu · 2022 · Frontiers in Genetics
  85. Marks that persist: DNA methylation in plant transgenerational memory and inheritance
    Priscila Ariane Auler, Marcelo Nogueira do Amaral · 2025 · Plant Physiology and Biochemistry
  86. A review of plant epigenetics through the lens of almond
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  87. Bryophytes as metabolic engineering platforms
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  88. Buried in PEAT—discovery of a new silencing complex with opposing activities
    Masayuki Tsuzuki, Andrzej T. Wierzbicki · 2018 · The EMBO Journal
  89. Involvement of Epigenetic Regulation in Plant Defence during Biotic Stress
    Jasmine M. Shah, Joyous T. Joseph · 2022 · IntechOpen eBooks
  90. The unequal functional redundancy of Arabidopsis INCURVATA11 and CUPULIFORMIS2 is not dependent on genetic background
    Riad Nadi, Lucía Juan-Vicente, Eduardo Mateo‐Bonmatí, José Luis Micol · 2023 · Frontiers in Plant Science
  91. Small RNAs: Master Regulators of Epigenetic Silencing in Plants
    Sarma Rajeev Kumar, Safia, Sathishkumar Ramalingam · 2017 · RNA technologies
  92. Origin of Epigenetic Variation in Plants: Relationship with Genetic Variation and Potential Contribution to Plant Memory
    Massimiliano Lauria, Vincenzo Rossi · 2018 · Signaling and communication in plants
  93. Epigenetic Regulation in Fleshy Fruit: Perspective for Grape Berry Development and Ripening
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  94. Multifaceted roles of RNA polymerase IV in plant growth and development
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  95. Dynamic transcriptomic responses to soybean cyst nematode infection in soybean genotypes with contrasting resistance profiles
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  96. Epigenetic regulation under light and temperature fluctuations: chromatin remodeling and transcriptional memory in plants
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  97. The Function of Like Heterochromatin Protein 1 (LHP1) as an Epigenetic Regulator of Plant Development
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  98. Climatic and stress memory in trees - and how to study it
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  99. DNA methylation dynamics in male germline development in Brassica Rapa
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  100. Insights into the roles of chromatin-remodeling complex HOS15–PWR–HDA9 in plant development and stress responses
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