Epigenetic Regulation in Plants

Untitled work

Bartel (2004) · doi:10.1016/s0092-8674(04)00045-5 · Cited by 34,714 · see citing works

MicroRNAs: Target Recognition and Regulatory Functions

Bartel, D. P. (2009) · Cell · doi:10.1016/j.cell.2009.01.002 · Cited by 20,068 · see citing works

The functions of animal microRNAs

Ambros, V. (2004) · Nature · doi:10.1038/nature02871 · Cited by 10,728 · see citing works

Origins and Mechanisms of miRNAs and siRNAs

Carthew, R. W., & Sontheimer, E. J. (2009) · Cell · doi:10.1016/j.cell.2009.01.035 · Cited by 5,023 · see citing works

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

Law, J. A., & Jacobsen, S. E. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2719 · Cited by 3,868 · see citing works

Non-coding RNAs and cancer: microRNAs and beyond

Raia, R. M., & Călin, G. A. (2011) · Journal of Nucleic Acids Investigation · doi:10.4081/jnai.2011.e5 · Cited by 3,394 · see citing works

MicroRNAs AND THEIR REGULATORY ROLES IN PLANTS

Jones-Rhoades, M. W., Bartel, D. P., & Bartel, B. (2006) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.57.032905.105218 · Cited by 2,668 · see citing works

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

Lister, R., O’Malley, R. C., Tonti‐Filippini, J., Gregory, B. D., Berry, C. C., Millar, A. H., & Ecker, J. R. (2008) · Cell · doi:10.1016/j.cell.2008.03.029 · Cited by 2,424 · see citing works

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

Cokus, S. J., Feng, S.-H., Zhang, X.-Y., Chen, Z., Merriman, B., Haudenschild, C., Pradhan, S., Nelson, S., Pellegrini, M., & Jacobsen, S. (2008) · Nature · doi:10.1038/nature06745 · Cited by 2,278 · see citing works

Origin, Biogenesis, and Activity of Plant MicroRNAs

Voinnet, O. (2009) · Cell · doi:10.1016/j.cell.2009.01.046 · Cited by 2,215 · see citing works

Target mimicry provides a new mechanism for regulation of microRNA activity

Franco‐Zorrilla, J. M., Valli, A. A., Todesco, M., Mateos, I., Puga, M. I., Rubio‐Somoza, I., Leyva, A., Weigel, D., Garcı́a, J. A., & Paz‐Ares, J. (2007) · Nature Genetics · doi:10.1038/ng2079 · Cited by 2,074 · see citing works

Erasers of Histone Acetylation: The Histone Deacetylase EnzymesPreprint

Seto, E., & Yoshida, M. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018713 · Cited by 2,019 · see citing works

Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis

Zhang, X., Yazaki, J., Sundaresan, A., Cokus, S. J., Chan, S. W.-L., Chen, H., Henderson, I. R., Shinn, P., Pellegrini, M. A., Jacobsen, S. E., et al. (2006) · Cell · doi:10.1016/j.cell.2006.08.003 · Cited by 1,818 · see citing works

Role of MicroRNAs in Plant and Animal Development

Carrington, J. C., & Ambros, V. (2003) · Science · doi:10.1126/science.1085242 · Cited by 1,769 · see citing works

The origin and behavior of mutable loci in maize

McClintock, B. (1950) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.36.6.344 · Cited by 1,752 · see citing works

Antiviral Immunity Directed by Small RNAs

Ding, S., & Voinnet, O. (2007) · Cell · doi:10.1016/j.cell.2007.07.039 · Cited by 1,543 · see citing works

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

Zilberman, D., Gehring, M. A., Tran, R. K., Ballinger, T. J., & Henikoff, S. (2006) · Nature Genetics · doi:10.1038/ng1929 · Cited by 1,369 · see citing works

Conservation and divergence of methylation patterning in plants and animals

Feng, S., Cokus, S. J., Zhang, X., Chen, P.-Y., Bostick, M., Goll, M. G., Hetzel, J., Jain, J., Strauss, S. H., Halpern, M. E., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002720107 · Cited by 1,285 · see citing works

An epigenetic mutation responsible for natural variation in floral symmetry

Cubas, P., Vincent, C. A., & Coen, E. (1999) · Nature · doi:10.1038/43657 · Cited by 1,247 · see citing works

Methylation of tRNA Asp by the DNA Methyltransferase Homolog Dnmt2

Goll, M. G., Kirpekar, F., Maggert, K. A., Yoder, J. A., Hsieh, C., Zhang, X., Golic, K. G., Jacobsen, S. E., & Bestor, T. H. (2006) · Science · doi:10.1126/science.1120976 · Cited by 1,192 · see citing works

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

Zemach, A., Kim, M. Y., Hsieh, P.-H., Coleman‐Derr, D., Williams, L. E., Thao, K., Harmer, S. L., & Zilberman, D. (2013) · Cell · doi:10.1016/j.cell.2013.02.033 · Cited by 1,150 · see citing works

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

Ossowski, S., Schneeberger, K., Lucas‐Lledó, J. I., Warthmann, N., Clark, R. M., Shaw, R. G., Weigel, D., & Lynch, M. (2009) · Science · doi:10.1126/science.1180677 · Cited by 1,148 · see citing works

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

Khraiwesh, B., Zhu, J., & Zhu, J. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.05.001 · Cited by 1,053 · see citing works

Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs

Baumberger, N., & Baulcombe, D. C. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0505461102 · Cited by 1,049 · see citing works

The Mirtron Pathway Generates microRNA-Class Regulatory RNAs in Drosophila

Okamura, K., Hagen, J. W., Duan, H., Tyler, D. M., & Lai, E. C. (2007) · Cell · doi:10.1016/j.cell.2007.06.028 · Cited by 1,028 · see citing works

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

Slotkin, R. K., Vaughn, M. W., Borges, F., Tanurdžić, M., Becker, J. D., Feijó, J. A., & Martienssen, R. A. (2009) · Cell · doi:10.1016/j.cell.2008.12.038 · Cited by 993 · see citing works

H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis

Kumar, S. V., & Wigge, P. A. (2010) · Cell · doi:10.1016/j.cell.2009.11.006 · Cited by 971 · see citing works

DNA Methylation in MammalsPreprint

Li, E., & Zhang, Y. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019133 · Cited by 952 · see citing works

Small RNAs and Their Roles in Plant Development

Chen, X. (2009) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.042308.113417 · Cited by 938 · see citing works

RNA-directed de novo methylation of genomic sequences in plants

Wassenegger, M., Heimes, S., Riedel, L., & Sanger, H. L. (1994) · Cell · doi:10.1016/0092-8674(94)90119-8 · Cited by 929 · see citing works

Transcriptional silencing and promoter methylation triggered by double‐stranded RNA

Mette, M. F., Aufsatz, W., van der Winden, J., Matzke, M. A., & Matzke, A. J. M. (2000) · The EMBO Journal · doi:10.1093/emboj/19.19.5194 · Cited by 869 · see citing works

RNA-based antiviral immunity

Ding, S. (2010) · Nature reviews. Immunology · doi:10.1038/nri2824 · Cited by 863 · see citing works

microPrimer: the biogenesis and function of microRNA

Du, T., & Zamore, P. D. (2005) · Development · doi:10.1242/dev.02070 · Cited by 809 · see citing works

DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis

Choi, Y., Gehring, M. A., Johnson, L. M., Hannon, M., Harada, J. J., Goldberg, R. B., Jacobsen, S. E., & Fischer, R. L. (2002) · Cell · doi:10.1016/s0092-8674(02)00807-3 · Cited by 797 · see citing works

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes

Pandey, R. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf660 · Cited by 783 · see citing works

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

Montgomery, T. A., Howell, M. D., Cuperus, J. T., Li, D., Hansen, J. E., Alexander, A. L., Chapman, E. J., Fahlgren, N., Allen, E. M., & Carrington, J. C. (2008) · Cell · doi:10.1016/j.cell.2008.02.033 · Cited by 775 · see citing works

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

Becker, C., Hagmann, J., Müller, J., Koenig, D., Stegle, O., Borgwardt, K. M., & Weigel, D. (2011) · Nature · doi:10.1038/nature10555 · Cited by 757 · see citing works

Histone Methylation in Higher Plants

Liu, C., Lu, F., Cui, X., & Cao, X. (2010) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.043008.091939 · Cited by 735 · see citing works

The diversity of RNA silencing pathways in plants

Brodersen, P., & Voinnet, O. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.03.003 · Cited by 733 · see citing works

Evolution and Functional Diversification of MIRNA Genes

Cuperus, J. T., Fahlgren, N., & Carrington, J. C. (2011) · The Plant Cell · doi:10.1105/tpc.110.082784 · Cited by 722 · see citing works

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

Roudier, F., Ahmed, I., Bérard, C., Sarazin, A., Mary‐Huard, T., Cortijo, S., Bouyer, D., Caillieux, E., Duvernois‐Berthet, E., Al-Shikhley, L., et al. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.103 · Cited by 707 · see citing works

Systemic Spread of Sequence-Specific Transgene RNA Degradation in Plants Is Initiated by Localized Introduction of Ectopic Promoterless DNA

Voinnet, O., Vain, P., Angell, S. M., & Baulcombe, D. C. (1998) · Cell · doi:10.1016/s0092-8674(00)81749-3 · Cited by 707 · see citing works

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

Schmitz, R. J., Schultz, M. D., Lewsey, M. G., O’Malley, R. C., Urich, M. A., Libiger, O., Schork, N. J., & Ecker, J. R. (2011) · Science · doi:10.1126/science.1212959 · Cited by 702 · see citing works

Noncoding Transcription by RNA Polymerase Pol IVb/Pol V Mediates Transcriptional Silencing of Overlapping and Adjacent Genes

Wierzbicki, A. T., Haag, J. R., & Pikaard, C. S. (2008) · Cell · doi:10.1016/j.cell.2008.09.035 · Cited by 697 · see citing works

Small RNA sorting: matchmaking for Argonautes

Czech, B., & Hannon, G. J. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2916 · Cited by 692 · see citing works

Specialization and evolution of endogenous small RNA pathways

Chapman, E. J., & Carrington, J. C. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2179 · Cited by 688 · see citing works

Roles of Plant Small RNAs in Biotic Stress Responses

Ruíz‐Ferrer, V., & Voinnet, O. (2009) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.043008.092111 · Cited by 647 · see citing works

Writers and Readers of Histone Acetylation: Structure, Mechanism, and InhibitionPreprint

Marmorstein, R., & Zhou, M. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018762 · Cited by 643 · see citing works

The Late Flowering Phenotype of fwa Mutants Is Caused by Gain-of-Function Epigenetic Alleles of a Homeodomain Gene

Soppe, W. J. J., Jacobsen, S. E., Alonso‐Blanco, C., Jackson, J. P., Kakutani, T., Koornneef, M., & Peeters, A. J. M. (2000) · Molecular Cell · doi:10.1016/s1097-2765(05)00090-0 · Cited by 609 · see citing works

Plant ARGONAUTES

Vaucheret, H. (2008) · Trends in Plant Science · doi:10.1016/j.tplants.2008.04.007 · Cited by 597 · see citing works

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

Zilberman, D., Coleman-Derr, D., Ballinger, T., & Henikoff, S. (2008) · Nature · doi:10.1038/nature07324 · Cited by 593 · see citing works

microRNA biogenesis and function in plants

Chen, X. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.07.071 · Cited by 565 · see citing works

Regulation and function of DNA methylation in plants and animals

He, X., Chen, T., & Zhu, J. (2011) · Cell Research · doi:10.1038/cr.2011.23 · Cited by 560 · see citing works

Origins and evolution of eukaryotic RNA interference

Shabalina, S. A., & Koonin, E. V. (2008) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2008.06.005 · Cited by 559 · see citing works

RNA-mediated chromatin-based silencing in plants

Matzke, M. A., Kanno, T., Daxinger, L., Hüettel, B., & Matzke, A. J. M. (2009) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.01.025 · Cited by 531 · see citing works

Biogenesis and germline functions of piRNAs

Klattenhoff, C., & Theurkauf, W. E. (2007) · Development · doi:10.1242/dev.006486 · Cited by 518 · see citing works

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

Chen, H., Chen, L.-T., Patel, K., Li, Y., Baulcombe, D. C., & Wu, S. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1001738107 · Cited by 515 · see citing works

Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development

Zhu, H., Hu, F., Wang, R., Zhou, X. Y., Sze, S., Liou, L. W., Barefoot, A., Dickman, M. B., & Zhang, X. (2011) · Cell · doi:10.1016/j.cell.2011.03.024 · Cited by 501 · see citing works

Epigenetic contribution to stress adaptation in plants

Mirouze, M., & Paszkowski, J. (2011) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2011.03.004 · Cited by 500 · see citing works

Position-Effect Variegation, Heterochromatin Formation, and Gene Silencing in Drosophila

Elgin, S. C. R., & Reuter, G. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017780 · Cited by 499 · see citing works

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

Axtell, M. J., Westholm, J. O., & Lai, E. C. (2011) · Genome biology · doi:10.1186/gb-2011-12-4-221 · Cited by 478 · see citing works

Epigenetic regulation of transposable elements in plants

Lisch, D. (2009) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.59.032607.092744 · Cited by 469 · see citing works

Comprehensive Catalog of Currently Documented Histone ModificationsPreprint

Zhao, Y., & Garcia, B. A. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a025064 · Cited by 460 · see citing works

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

Wierzbicki, A. T., Ream, T. S., Haag, J. R., & Pikaard, C. S. (2009) · Nature Genetics · doi:10.1038/ng.365 · Cited by 453 · see citing works

Evolution of plant microRNAs and their targets

Axtell, M. J., & Bowman, J. L. (2008) · Trends in Plant Science · doi:10.1016/j.tplants.2008.03.009 · Cited by 449 · see citing works

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

Cuperus, J. T., Carbonell, A., Fahlgren, N., García-Ruíz, H., Burke, R. T., Takeda, A., Sullivan, C. M., Gilbert, S. D., Montgomery, T. A., & Carrington, J. C. (2010) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.1866 · Cited by 447 · see citing works

Noncoding RNAs and Gene Silencing

Zaratiegui, M., Irvine, D. V., & Martienssen, R. A. (2007) · Cell · doi:10.1016/j.cell.2007.02.016 · Cited by 427 · see citing works

Common Functions for Diverse Small RNAs of Land Plants

Axtell, M. J., Snyder, J. A., & Bartel, D. P. (2007) · The Plant Cell · doi:10.1105/tpc.107.051706 · Cited by 421 · see citing works

Histone Variants and EpigeneticsPreprint

Henikoff, S., & Smith, M. M. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019364 · Cited by 414 · see citing works

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

Haag, J. R., & Pikaard, C. S. (2011) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3152 · Cited by 405 · see citing works

MicroRNA Binding Sites in Arabidopsis Class III HD-ZIP mRNAs Are Required for Methylation of the Template Chromosome

Bao, N., Lye, K.-W., & Barton, M. K. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.10.003 · Cited by 401 · see citing works

The developmental role of microRNA in plants

Kidner, C. A., & Martienssen, R. A. (2004) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2004.11.008 · Cited by 396 · see citing works

An epigenetic view of plant cells cultured in vitro: Somaclonal variation and beyond

Miguel, C., & Marum, L. (2011) · Journal of Experimental Botany · doi:10.1093/jxb/err155 · Cited by 395 · see citing works

TheArabidopsisRNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci

Havecker, E. R., Wallbridge, L. M., Hardcastle, T. J., Bush, M. S., Kelly, K. A., Dunn, R. M., Schwach, F., Doonan, J. H., & Baulcombe, D. C. (2010) · The Plant Cell · doi:10.1105/tpc.109.072199 · Cited by 375 · see citing works

Epigenetics and Human DiseasePreprint

Zoghbi, H. Y., & Beaudet, A. L. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019497 · Cited by 361 · see citing works

A Role for RNAi in the Selective Correction of DNA Methylation Defects

Teixeira, F. K., Heredia, F., Sarazin, A., Roudier, F., Boccara, M., Ciaudo, C., Cruaud, C., Poulain, J., Berdasco, M., Fraga, M. F., et al. (2009) · Science · doi:10.1126/science.1165313 · Cited by 358 · see citing works

Nucleosome Remodeling and Epigenetics

Becker, P. B., & Workman, J. L. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017905 · Cited by 355 · see citing works

Genomic and expression plasticity of polyploidy

Jackson, S. A., & Chen, Z. J. (2009) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2009.11.004 · Cited by 349 · see citing works

Nomenclature and functions of RNA-directed RNA polymerases

Wassenegger, M., & Krczal, G. (2006) · Trends in Plant Science · doi:10.1016/j.tplants.2006.01.003 · Cited by 336 · see citing works

MicroRNA networks and developmental plasticity in plants

Rubio‐Somoza, I., & Weigel, D. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.03.001 · Cited by 331 · see citing works

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

Mosher, R. A., Melnyk, C. W., Kelly, K. A., Dunn, R. M., Studholme, D. J., & Baulcombe, D. C. (2009) · Nature · doi:10.1038/nature08084 · Cited by 330 · see citing works

Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation

Agius, F., Kapoor, A., & Zhu, J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0603563103 · Cited by 328 · see citing works

New dimensions for VIGS in plant functional genomics

Senthil‐Kumar, M., & Mysore, K. S. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.08.006 · Cited by 316 · see citing works

Mirtrons: microRNA biogenesis via splicing

Westholm, J. O., & Lai, E. C. (2011) · Biochimie · doi:10.1016/j.biochi.2011.06.017 · Cited by 305 · see citing works

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks

Ortega-Galisteo, A. P., Morales‐Ruíz, T., Ariza, R. R., & Roldán‐Arjona, T. (2008) · Plant Molecular Biology · doi:10.1007/s11103-008-9346-0 · Cited by 293 · see citing works

DNA demethylation by DNA repair

Gehring, M. A., Reik, W., & Henikoff, S. (2009) · Trends in Genetics · doi:10.1016/j.tig.2008.12.001 · Cited by 283 · see citing works

RNAi and Heterochromatin AssemblyPreprint

Martienssen, R. A., & Moazed, D. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019323 · Cited by 281 · see citing works

Epigenetic Regulation in Plant Responses to the EnvironmentPreprint

Baulcombe, D. C., & Dean, C. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019471 · Cited by 272 · see citing works

Transcriptional Silencing by Polycomb-Group ProteinsPreprint

Grossniklaus, U., & Paro, R. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019331 · Cited by 266 · see citing works

Subunit Compositions of the RNA-Silencing Enzymes Pol IV and Pol V Reveal Their Origins as Specialized Forms of RNA Polymerase II

Ream, T. S., Haag, J. R., Wierzbicki, A. T., Nicora, C., Norbeck, A. D., Zhu, J., Hagen, G., Guilfoyle, T. J., Paša‐Tolić, L., & Pikaard, C. S. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.12.015 · Cited by 259 · see citing works

Histone Modifications in Transcriptional Activation during Plant Development

Berr, A., Shafiq, S., & Shen, W.-H. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.07.001 · Cited by 251 · see citing works

RNA-directed DNA methylation

Zhang, H., & Zhu, J. (2011) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2011.02.003 · Cited by 250 · see citing works

Intergenic transcription by RNA Polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in ArabidopsisPreprint

Zheng, B., Wang, Z., Li, S., Yu, B., Liu, J.-Y., & Chen, X. (2009) · Genes & Development · doi:10.1101/gad.1868009 · Cited by 248 · see citing works

SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV

Law, J. A., Vashisht, A., Wohlschlegel, J., & Jacobsen, S. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002195 · Cited by 233 · see citing works

Roles of dynamic and reversible histone acetylation in plant development and polyploidy

Chen, Z. J., & Tian, L. (2007) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2007.04.007 · Cited by 226 · see citing works

Big impacts by small RNAs in plant development

Chuck, G. S., Candela, H., & Hake, S. (2008) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2008.09.008 · Cited by 222 · see citing works

Imprinting of the MEA Polycomb Gene Is Controlled by Antagonism between MET1 Methyltransferase and DME Glycosylase

Xiao, W., Gehring, M. A., Choi, Y., Margossian, L. J., Pu, H., Harada, J. J., Goldberg, R. B., Pennell, R. I., & Fischer, R. L. (2003) · Developmental Cell · doi:10.1016/s1534-5807(03)00361-7 · Cited by 221 · see citing works

VIM1, a methylcytosine-binding protein required for centromeric heterochromatinizationPreprint

Woo, H. R., Pontes, O., Pikaard, C. S., & Richards, E. J. (2007) · Genes & Development · doi:10.1101/gad.1512007 · Cited by 219 · see citing works

Plant secondary siRNA production determined by microRNA-duplex structure

Manavella, P. A., Koenig, D., & Weigel, D. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1200169109 · Cited by 214 · see citing works

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

Schoft, V. K., Chumak, N., Choi, Y., Hannon, M., García-Aguilar, M., Machlicova, A., Ślusarz, L., Mosiołek, M., Park, J.-S., Park, G. T., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1105117108 · Cited by 210 · see citing works

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene Expression in Arabidopsis

Servet, C., Silva, N. C. E., & Zhou, D. (2010) · Molecular Plant · doi:10.1093/mp/ssq018 · Cited by 210 · see citing works

Deficient in DNA Methylation 1 (DDM1) Defines a Novel Family of Chromatin-remodeling Factors

Brzeski, J., & Jerzmanowski, A. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m209260200 · Cited by 210 · see citing works

A SWI/SNF Chromatin-Remodeling Complex Acts in Noncoding RNA-Mediated Transcriptional Silencing

Zhu, Y., Rowley, M. J., Böhmdorfer, G., & Wierzbicki, A. T. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.11.011 · Cited by 209 · see citing works

In vitro specificities of Arabidopsis co‐activator histone acetyltransferases: implications for histone hyperacetylation in gene activation

Earley, K. W., Shook, M., Brower‐Toland, B. D., Hicks, L. M., & Pikaard, C. S. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03264.x · Cited by 209 · see citing works

In Vitro Transcription Activities of Pol IV, Pol V, and RDR2 Reveal Coupling of Pol IV and RDR2 for dsRNA Synthesis in Plant RNA Silencing

Haag, J. R., Ream, T. S., Marasco, M. R., Nicora, C., Norbeck, A. D., Paša‐Tolić, L., & Pikaard, C. S. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.09.027 · Cited by 201 · see citing works

Selected aspects of transgenerational epigenetic inheritance and resetting in plants

Paszkowski, J., & Grossniklaus, U. (2011) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2011.01.002 · Cited by 200 · see citing works

Small RNAs and developmental timing in plants

Poethig, R. S. (2009) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2009.06.001 · Cited by 199 · see citing works

Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases

Jacob, Y., Stroud, H., LeBlanc, C., Feng, S., Zhuo, L., Caro, E., Hassel, C. A., Gutiérrez, C., Michaels, S. D., & Jacobsen, S. E. (2010) · Nature · doi:10.1038/nature09290 · Cited by 198 · see citing works

Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis

Woo, H. R., Dittmer, T. A., & Richards, E. J. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000156 · Cited by 190 · see citing works

Natural epigenetic variation in plant species: a view from the field

Richards, E. J. (2011) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2011.03.009 · Cited by 186 · see citing works

Genomic imprinting in plants: observations and evolutionary implications

Alleman, M. M., & Doctor, J. S. (2000) · Plant Molecular Biology · doi:10.1023/a:1006419025155 · Cited by 177 · see citing works

Epigenetic Regulation of Chromatin States inSchizosaccharomyces pombePreprint

Allshire, R. C., & Ekwall, K. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018770 · Cited by 174 · see citing works

Stress-induced chromatin changes: A critical view on their heritability

Pecinka, A., & Mittelsten Scheid, O. (2012) · Plant and Cell Physiology · doi:10.1093/pcp/pcs044 · Cited by 173 · see citing works

Maintenance of Epigenetic InformationPreprint

Almouzni, G., & Cedar, H. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019372 · Cited by 170 · see citing works

Paramutation in maize

Chandler, V. L., Eggleston, W. B., & Dorweiler, J. E. (2000) · Plant Molecular Biology · doi:10.1023/a:1006499808317 · Cited by 163 · see citing works

The Arabidopsis HOMOLOGY-DEPENDENT GENE SILENCING1 Gene Codes for an S -Adenosyl-l-Homocysteine Hydrolase Required for DNA Methylation-Dependent Gene Silencing

Rocha, P. S. C. F., Sheikh, M., Melchiorre, R., Fagard, M., Boutet‐Mercey, S., Loach, R., Moffatt, B. A., Wagner, C., Vaucheret, H., & Furner, I. J. (2005) · The Plant Cell · doi:10.1105/tpc.104.028332 · Cited by 163 · see citing works

Histone variants and modifications in plant gene regulation

Deal, R. B., & Henikoff, S. (2010) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2010.11.005 · Cited by 161 · see citing works

ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis

Zheng, X., Pontes, O., Zhu, J., Miki, D., Zhang, F., Li, W.-X., Iida, K., Kapoor, A., Pikaard, C. S., & Zhu, J. (2008) · Nature · doi:10.1038/nature07305 · Cited by 155 · see citing works

The biosynthetic pathways and biological scopes of plant small RNAs

Vazquez, F., Legrand, S., & Windels, D. (2010) · Trends in Plant Science · doi:10.1016/j.tplants.2010.04.001 · Cited by 153 · see citing works

miRNAs in the biogenesis of trans-acting siRNAs in higher plants

Allen, E. M., & Howell, M. D. (2010) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2010.03.008 · Cited by 153 · see citing works

Multimegabase Silencing in Nucleolar Dominance Involves siRNA-Directed DNA Methylation and Specific Methylcytosine-Binding Proteins

Preuss, S. B., Costa‐Nunes, P., Tucker, S., Pontes, O., Lawrence, R. J., Mosher, R. A., Kasschau, K. D., Carrington, J. C., Baulcombe, D. C., Viegas, W. S., et al. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.11.009 · Cited by 151 · see citing works

rRNA gene silencing and nucleolar dominance: Insights into a chromosome-scale epigenetic on/off switch

Preuss, S. B., & Pikaard, C. S. (2007) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2007.02.005 · Cited by 150 · see citing works

Phosphorylation of histone H3 in plants—A dynamic affair

Houben, A., Demidov, D., Caperta, A. D., Karimi-Ashtiyani, R., Agueci, F., & Vlasenko, L. (2007) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2007.01.002 · Cited by 147 · see citing works

Patterning of Virus-Infected Glycine max Seed Coat Is Associated with Suppression of Endogenous Silencing of Chalcone Synthase Genes

Senda, M., Masuta, C., Ohnishi, S., Goto, K., Kasai, A., Sano, T., Hong, J., & MacFarlane, S. (2004) · The Plant Cell · doi:10.1105/tpc.019885 · Cited by 147 · see citing works

Epigenetic control of gene regulation in plants

Lauria, M., & Rossi, V. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.03.002 · Cited by 141 · see citing works

SWI/SNF chromatin remodeling and linker histones in plants

Jerzmanowski, A. (2007) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2006.12.003 · Cited by 135 · see citing works

Common themes in siRNA-mediated epigenetic silencing pathways

Verdel, A., Vavasseur, A., Le Gorrec, M., & Touat-Todeschini, L. (2009) · The International Journal of Developmental Biology · doi:10.1387/ijdb.082691av · Cited by 135 · see citing works

Paramutation in maize: RNA mediated trans-generational gene silencing

Arteaga-Vazquez, M. A., & Chandler, V. L. (2010) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2010.01.008 · Cited by 134 · see citing works

piRNAs and their involvement in male germline development in mice

Pillai, R. S., & Chuma, S. (2012) · Development Growth & Differentiation · doi:10.1111/j.1440-169x.2011.01320.x · Cited by 133 · see citing works

Regulation and Flexibility of Genomic Imprinting during Seed Development

Raissig, M. T., Baroux, C., & Grossniklaus, U. (2011) · The Plant Cell · doi:10.1105/tpc.110.081018 · Cited by 131 · see citing works

SET domain proteins in plant development

Thorstensen, T., Grini, P. E., & Aalen, R. B. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.05.008 · Cited by 128 · see citing works

Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation

Durand, S., Bouché, N., Strand, E. P., Loudet, O., & Camilleri, C. (2012) · Current Biology · doi:10.1016/j.cub.2011.12.054 · Cited by 126 · see citing works

Arabidopsis Histone Lysine Methyltransferases

Pontvianne, F., Blevins, T., & Pikaard, C. S. (2010) · Advances in botanical research · doi:10.1016/s0065-2296(10)53001-5 · Cited by 125 · see citing works

Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature

Roux, F., Colomé‐Tatché, M., Edelist, C., Wardenaar, R., Guerche, P., Colot, V., Jansen, R. C., & Johannes, F. M. (2011) · Genetics · doi:10.1534/genetics.111.128744 · Cited by 123 · see citing works

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more

Roudier, F., Teixeira, F. K., & Colot, V. (2009) · Trends in Genetics · doi:10.1016/j.tig.2009.09.013 · Cited by 122 · see citing works

Transcriptional Regulation by Trithorax-Group ProteinsPreprint

Kingston, R. E., & Tamkun, J. W. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019349 · Cited by 121 · see citing works

Structural and Functional Coordination of DNA and Histone MethylationPreprint

Cheng, X. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018747 · Cited by 119 · see citing works

Methylation and demethylation of the Arabidopsis genome

Furner, I. J., & Matzke, M. A. (2010) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2010.11.004 · Cited by 107 · see citing works

Viral RNA silencing suppressors (RSS): Novel strategy of viruses to ablate the host RNA interference (RNAi) defense system

Bivalkar-Mehla, S., Vakharia, J. D., Mehla, R., Abreha, M. H., Kanwar, J. R., Tikoo, A., & Chauhan, A. (2010) · Virus Research · doi:10.1016/j.virusres.2010.10.003 · Cited by 107 · see citing works

The Discovery of Histone DemethylasesPreprint

Shi, Y. G., & Tsukada, Y.-I. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017947 · Cited by 101 · see citing works

Mutations in two non‐canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects

Sang, Y., Silva‐Ortega, C. O., Wu, S., Yamaguchi, N., Wu, M., Pfluger, J., Gillmor, C. S., Gallagher, K. L., & Wagner, D. (2012) · The Plant Journal · doi:10.1111/tpj.12009 · Cited by 95 · see citing works

Arabidopsis RPA2: A Genetic Link among Transcriptional Gene Silencing, DNA Repair, and DNA Replication

Elmayan, T., Proux, F., & Vaucheret, H. (2005) · Current Biology · doi:10.1016/j.cub.2005.09.044 · Cited by 94 · see citing works

HMG Domain Containing SSRP1 Is Required for DNA Demethylation and Genomic Imprinting in Arabidopsis

Ikeda, Y., Kinoshita, Y., Susaki, D., Ikeda, Y., Iwano, M., Takayama, S., Higashiyama, T., Kakutani, T., & Kinoshita, T. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.08.013 · Cited by 94 · see citing works

A DNA 3′ Phosphatase Functions in Active DNA Demethylation in Arabidopsis

Martínez-Macías, M. I., Qian, W., Miki, D., Pontes, O., Liu, Y., Tang, K., Liu, R., Morales‐Ruíz, T., Ariza, R. R., Roldán‐Arjona, T., et al. (2012) · Molecular Cell · doi:10.1016/j.molcel.2011.11.034 · Cited by 93 · see citing works

Histone variants and chromatin assembly in plant abiotic stress responses

Zhu, Y., Dong, A., & Shen, W. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.07.012 · Cited by 91 · see citing works

Posttranscriptional gene silencing in nuclei

Hoffer, P. H., Ivashuta, S. I., Pontes, O., Vitins, A. P., Pikaard, C. S., Mroczka, A., Wagner, N., & Voelker, T. A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1009805108 · Cited by 90 · see citing works

Planting the Seeds of a New Paradigm

Matzke, M. A., & Matzke, A. J. M. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020133 · Cited by 89 · see citing works

Active DNA demethylation and DNA repair

Niehrs, C. (2009) · Differentiation · doi:10.1016/j.diff.2008.09.004 · Cited by 83 · see citing works

Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States inArabidopsis

Baubec, T., Dinh, H. Q., Pečinka, A., Rakic, B., Rozhon, W., Wohlrab, B., von Haeseler, A., & Scheid, O. M. (2010) · The Plant Cell · doi:10.1105/tpc.109.072819 · Cited by 83 · see citing works

Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories

Rymarquis, L. A., Souret, F. F., & Green, P. J. (2011) · RNA · doi:10.1261/rna.2467911 · Cited by 82 · see citing works

An Epigenetic Integrator: New Insights into Genome Regulation, Environmental Stress Responses and Developmental Controls by HISTONE DEACETYLASE 6

Kim, J., To, T. K., & Seki, M. (2012) · Plant and Cell Physiology · doi:10.1093/pcp/pcs004 · Cited by 81 · see citing works

Regulation of cell identity by plant Polycomb and trithorax group proteins

Köhler, C., & Hennig, L. (2010) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2010.04.015 · Cited by 80 · see citing works

Evolutionary Divergence of Monocot and Dicot Methyl-CpG-Binding Domain Proteins

Springer, N. M., & Kaeppler, S. M. (2005) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.060566 · Cited by 79 · see citing works

Regulation of Pol I-Transcribed 45S rDNA and Pol III-Transcribed 5S rDNA in Arabidopsis

Layat, E., Sáez‐Vasquez, J., & Tourmente, S. (2011) · Plant and Cell Physiology · doi:10.1093/pcp/pcr177 · Cited by 78 · see citing works

Diverse small RNA-directed silencing pathways in plants

Xie, Z., & QI, X. (2008) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2008.02.009 · Cited by 77 · see citing works

A Multistep Process Gave Rise to RNA Polymerase IV of Land Plants

Luo, J., & Hall, B. D. (2006) · Journal of Molecular Evolution · doi:10.1007/s00239-006-0093-z · Cited by 76 · see citing works

DNA methylation systems and targets in plants

Meyer, P. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.08.017 · Cited by 76 · see citing works

Pathways through the small RNA world of plants

Herr, A. J. (2005) · FEBS Letters · doi:10.1016/j.febslet.2005.08.040 · Cited by 75 · see citing works

Mutations in a Conserved Replication Protein Suppress Transcriptional Gene Silencing in a DNA- Methylation-Independent Manner in Arabidopsis

Kapoor, A., Agarwal, M., Andreucci, A. C., Zheng, X., Gong, Z., Hasegawa, P. M., Bressan, R. A., & Zhu, J. (2005) · Current Biology · doi:10.1016/j.cub.2005.09.013 · Cited by 75 · see citing works

The Use of Mouse Models to Study EpigeneticsPreprint

Blewitt, M., & Whitelaw, E. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017939 · Cited by 73 · see citing works

Histone3 variants in plants

Ingouff, M., & Berger, F. (2009) · Chromosoma · doi:10.1007/s00412-009-0237-1 · Cited by 71 · see citing works

MGOUN1Encodes anArabidopsisType IB DNA Topoisomerase Required in Stem Cell Regulation and to Maintain Developmentally Regulated Gene Silencing

Graf, P., Dołzbłasz, A., Würschum, T., Lenhard, M., Pfreundt, U., & Laux, T. (2010) · The Plant Cell · doi:10.1105/tpc.109.068296 · Cited by 69 · see citing works

Evolutionary History of Plant Multisubunit RNA Polymerases IV and V: Subunit Origins via Genome-Wide and Segmental Gene Duplications, Retrotransposition, and Lineage-Specific SubfunctionalizationPreprint

Tucker, S., Reece, J., Ream, T. S., & Pikaard, C. S. (2010) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2010.75.037 · Cited by 62 · see citing works

The ArgonautesPreprint

Joshua‐Tor, L. (2006) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2006.71.048 · Cited by 59 · see citing works

Polycomb-group mediated epigenetic mechanisms through plant evolution

Butenko, Y., & Ohad, N. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.05.013 · Cited by 54 · see citing works

Methyl-CpG-binding domain (MBD) proteins in plants

Grafi, G., Zemach, A., & Pitto, L. (2007) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2007.02.004 · Cited by 54 · see citing works

RNA-directed DNA methylation

Mahfouz, M. M. (2010) · Plant Signaling & Behavior · doi:10.4161/psb.5.7.11695 · Cited by 50 · see citing works

Epigenetic control of Agrobacterium T-DNA integration

Magori, S., & Citovsky, V. (2011) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2011.01.007 · Cited by 50 · see citing works

Arabidopsis histone deacetylase 6: a green link to RNA silencing

Aufsatz, W., Stoiber, T., Rakic, B., & Naumann, K. (2007) · Oncogene · doi:10.1038/sj.onc.1210615 · Cited by 49 · see citing works

Paramutation: a process for acquiring trans-generational regulatory states

Erhard, K. F., & Hollick, J. B. (2011) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2011.02.005 · Cited by 49 · see citing works

Plant Mobile Small RNAsPreprint

Dunoyer, P., Melnyk, C. W., Molnar, A., & Slotkin, R. K. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017897 · Cited by 47 · see citing works

Short Silencing RNA: The Dark Matter of Genetics?Preprint

Baulcombe, D. C. (2006) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2006.71.052 · Cited by 44 · see citing works

Plant-specific multisubunit RNA polymerase in gene silencing

Lahmy, S., Bies‐Etheve, N., & Lagrange, T. (2010) · Epigenetics · doi:10.4161/epi.5.1.10435 · Cited by 39 · see citing works

Histone Acetyltransferase AtGCN5/HAG1 Is a Versatile Regulator of Developmental and Inducible Gene Expression in Arabidopsis

Caroline, C., Servet, Natalia, N., Conde, SILVA, S., Dao-Xiu, & Zhou (2010) · 分子植物：英文版 · Cited by 37 · see citing works

Unlocking the Arabidopsis epigenome

Reinders, J., & Paszkowski, J. (2009) · Epigenetics · doi:10.4161/epi.4.8.10347 · Cited by 36 · see citing works

Gene silencing

Wassenegger, M. (2002) · International review of cytology · doi:10.1016/s0074-7696(02)19011-5 · Cited by 32 · see citing works

Functional Consequences of Subunit Diversity in RNA Polymerases II and V

Tan, E. H., Blevins, T., Ream, T. S., & Pikaard, C. S. (2012) · Cell Reports · doi:10.1016/j.celrep.2012.01.004 · Cited by 30 · see citing works

The role of chromosomal HMGB proteins in plants

Pedersen, D. S., & Grasser, K. D. (2010) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2009.11.004 · Cited by 28 · see citing works

The Function of RNAi in Plant DevelopmentPreprint

Poethig, R. S., Peragine, A., Yoshikawa, M., Hunter, C., Willmann, M. R., & Wu, G. (2006) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2006.71.030 · Cited by 27 · see citing works

Systemic Spread of Sequence-Specific Transgene RNA Degradation in Plants Is Initiated by Localized Introduction of Ectopic Promoterless DNA

Voinnet, O., Vain, P., Angell, S. M., & Baulcombe, D. C. (2016) · Cell · doi:10.1016/j.cell.2016.07.014 · Cited by 25 · see citing works

Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis

Jordan, N. D., West, J. P., Bottley, A., Sheikh, M., & Furner, I. J. (2007) · Plant Molecular Biology · doi:10.1007/s11103-007-9221-4 · Cited by 24 · see citing works

The Discovery of Histone DemethylasesPreprint

Shi, Y. G., & Tsukada, Y.-I. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a022335 · Cited by 22 · see citing works

Ectopic Gene Expression and Organogenesis inArabidopsisMutants Missing BRU1 Required for Genome Maintenance

Ohno, Y., Narangajavana, J., Yamamoto, A., Hattori, T., Kagaya, Y., Paszkowski, J., Gruissem, W., Hennig, L., & Takeda, S. (2011) · Genetics · doi:10.1534/genetics.111.130062 · Cited by 19 · see citing works

A Paragenetic Perspective on Integration of RNA Silencing into the Epigenome and Its Role in the Biology of Higher PlantsPreprint

Jorgensen, R. A., Doetsch, N., MÜLLER, A. E., Que, Q., Gendler, K., & Napoli, C. A. (2006) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2006.71.023 · Cited by 17 · see citing works

Plant Cohesins, Common Themes and Unique Roles

Li, Y., Yang, X., & Makaroff, C. A. (2011) · Current Protein and Peptide Science · doi:10.2174/138920311795684904 · Cited by 13 · see citing works

Epigenetic silencing of endogenous repetitive sequences by MORPHEUS’ MOLECULE1 inArabidopsis thaliana

Habu, Y. (2010) · Epigenetics · doi:10.4161/epi.5.7.12518 · Cited by 12 · see citing works

Recognition of non-methyl histone marks

Bycroft, M. (2011) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2011.09.006 · Cited by 9 · see citing works

Genomic imprinting in plants: observations and evolutionary implications

Alleman, M. M., & Doctor, J. S. (2000) · Springer eBooks · doi:10.1007/978-94-011-4183-3_2 · Cited by 7 · see citing works

Plant Cohesins, Common Themes and Unique Roles

Li, Y., Yang, X., & Makaroff, C. A. (2011) · Current Protein and Peptide Science · doi:10.2174/1389211213488482037 · Cited by 2 · see citing works

The molecular hallmarks of epigenetic control

Allis, C. D., & Jenuwein, T. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.59 · Cited by 2,809 · see citing works

DNA Methylation in MammalsPreprint

Li, E., & Zhang, Y. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019133 · Cited by 952 · see citing works

Position-Effect Variegation, Heterochromatin Formation, and Gene Silencing in Drosophila

Elgin, S. C. R., & Reuter, G. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017780 · Cited by 499 · see citing works

Somatic embryogenesis — Stress-induced remodeling of plant cell fate

Fehér, A. (2014) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2014.07.005 · Cited by 480 · see citing works

Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond

Breiling, A., & Lyko, F. (2015) · Epigenetics & Chromatin · doi:10.1186/s13072-015-0016-6 · Cited by 353 · see citing works

Epigenetics of Modified DNA Bases: 5-Methylcytosine and Beyond

Kumar, S., Chinnusamy, V., & Mohapatra, T. (2018) · Frontiers in Genetics · doi:10.3389/fgene.2018.00640 · Cited by 287 · see citing works

RNAi and Heterochromatin AssemblyPreprint

Martienssen, R. A., & Moazed, D. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019323 · Cited by 281 · see citing works

Epigenetic Regulation in Plant Responses to the EnvironmentPreprint

Baulcombe, D. C., & Dean, C. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019471 · Cited by 272 · see citing works

Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies

Gopal, M., & Gupta, A. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.01971 · Cited by 248 · see citing works

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development

He, L. S., Huang, H., Bradai, M., Zhao, C., You, Y., Ma, J., Zhao, L., Lozano‐Durán, R., & Zhu, J. (2022) · Nature Communications · doi:10.1038/s41467-022-28940-2 · Cited by 231 · see citing works

Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues

Gallusci, P., Dai, Z., Génard, M., Gauffretau, A., Leblanc‐Fournier, N., Richard‐Molard, C., Vile, D., & Brunel‐Muguet, S. (2017) · Trends in Plant Science · doi:10.1016/j.tplants.2017.04.009 · Cited by 230 · see citing works

50 years of Arabidopsis research: highlights and future directions

Provart, N. J., Alonso, J. M., Assmann, S. M., Bergmann, D. C., Brady, S. M., Brkljacić, J., Browse, J., Chapple, C. C. S., Colot, V., Cutler, S. R., et al. (2015) · New Phytologist · doi:10.1111/nph.13687 · Cited by 226 · see citing works

Plant hormones and the control of physiological processes

Weyers, J. D. B., & Paterson, N. W. (2001) · New Phytologist · doi:10.1046/j.0028-646x.2001.00281.x · Cited by 208 · see citing works

Ethylene Response Factor (ERF) Family Proteins in Abiotic Stresses and CRISPR–Cas9 Genome Editing of ERFs for Multiple Abiotic Stress Tolerance in Crop Plants: A Review

Debbarma, J., Sarki, Y. N., Saikia, B., Boruah, H. P. D., Singha, D. L., & Chikkaputtaiah, C. (2019) · Molecular Biotechnology · doi:10.1007/s12033-018-0144-x · Cited by 195 · see citing works

DNA Methylation in Plant Responses and Adaption to Abiotic Stresses

Sun, M., Yang, Z., Liu, L., & Duan, L. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23136910 · Cited by 193 · see citing works

Sexual-lineage-specific DNA methylation regulates meiosis in Arabidopsis

Walker, J., Gao, H., Zhang, J., Aldridge, B., Vickers, M. J., Higgins, J. D., & Feng, X. (2017) · Nature Genetics · doi:10.1038/s41588-017-0008-5 · Cited by 190 · see citing works

Mechanisms of Plant Epigenetic Regulation in Response to Plant Stress: Recent Discoveries and Implications

Abdulraheem, M. I., Xiong, Y., Moshood, A. Y., Cadenas‐Pliego, G., Zhang, H., & Hu, J. (2024) · Plants · doi:10.3390/plants13020163 · Cited by 190 · see citing works

Surviving in a Hostile World: Plant Strategies to Resist Pests and Diseases

Wilkinson, S. W., Magerøy, M. H., Sánchez, A. L., Smith, L. M., Furci, L., Cotton, T. E. A., Krokene, P., & Ton, J. (2019) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-082718-095959 · Cited by 177 · see citing works

POWERDRESS interacts with HISTONE DEACETYLASE 9 to promote aging in Arabidopsis

Chen, X., Lü, L., Mayer, K. S., Scalf, M., Qian, S., Lomax, A., Smith, L. M., & Zhong, X. (2016) · eLife · doi:10.7554/elife.17214 · Cited by 175 · see citing works

Epigenetic Regulation of Chromatin States inSchizosaccharomyces pombePreprint

Allshire, R. C., & Ekwall, K. (2015) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018770 · Cited by 174 · see citing works

Maintenance of Epigenetic InformationPreprint

Almouzni, G., & Cedar, H. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a019372 · Cited by 170 · see citing works

Dynamic Epigenetic Changes during Plant Regeneration

Lee, K., & Seo, P. J. (2018) · Trends in Plant Science · doi:10.1016/j.tplants.2017.11.009 · Cited by 162 · see citing works

Roles and activities of chromatin remodeling ATP ases in plants

Han, S., Wu, M., Cui, S., & Wagner, D. (2015) · The Plant Journal · doi:10.1111/tpj.12877 · Cited by 158 · see citing works

Cold plasma seed priming modulates growth, redox homeostasis and stress response by inducing reactive species in tomato (Solanum lycopersicum)

Adhikari, B., Adhikari, M., Ghimire, B., Adhikari, B. C., Park, G., & Choi, E. H. (2020) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2020.06.003 · Cited by 157 · see citing works

RNA-directed DNA methylation mediated by DRD1 and Pol IVb: A versatile pathway for transcriptional gene silencing in plants

Hüettel, B., Kanno, T., Daxinger, L., Bucher, E., van der Winden, J., Matzke, A. J. M., & Matzke, M. A. (2007) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/j.bbaexp.2007.03.001 · Cited by 156 · see citing works

Locus-specific control of the de novo DNA methylation pathway in Arabidopsis by the CLASSY family

Zhou, M., Palanca, A. M. S., & Law, J. A. (2018) · Nature Genetics · doi:10.1038/s41588-018-0115-y · Cited by 157 · see citing works

Neurospora crassa, a Model System for Epigenetics ResearchPreprint

Aramayo, R., & Selker, E. U. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017921 · Cited by 156 · see citing works

Nurse cell–derived small RNAs define paternal epigenetic inheritance in Arabidopsis

Long, J., Walker, J., She, W., Aldridge, B., Gao, H., Deans, S., Vickers, M. J., & Feng, X. (2021) · Science · doi:10.1126/science.abh0556 · Cited by 144 · see citing works

DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening

Gallusci, P., Hodgman, C. T., Teyssier, E., & Seymour, G. B. (2016) · Frontiers in Plant Science · doi:10.3389/fpls.2016.00807 · Cited by 141 · see citing works

Dynamic regulation of DNA methylation and histone modifications in response to abiotic stresses in plants

Liu, Y., Wang, J., Liu, B., & Xu, Z. (2022) · Journal of Integrative Plant Biology · doi:10.1111/jipb.13368 · Cited by 139 · see citing works

Nitric Oxide Modulates Histone Acetylation at Stress Genes by Inhibition of Histone Deacetylases

Mengel, A., Ageeva, A., Georgii, E., Bernhardt, J., Wu, K., Durner, J., & Lindermayr, C. (2016) · PLANT PHYSIOLOGY · doi:10.1104/pp.16.01734 · Cited by 134 · see citing works

Double-edged sword: The evolutionary consequences of the epigenetic silencing of transposable elements

Choi, J. Y., & Lee, Y. C. G. (2020) · PLoS Genetics · doi:10.1371/journal.pgen.1008872 · Cited by 127 · see citing works

Epigenetics of CiliatesPreprint

Chalker, D. L., Meyer, É., & Mochizuki, K. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017764 · Cited by 122 · see citing works

Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance

Kumar, V., Khare, T. R., Shriram, V., & Wani, S. H. (2017) · Plant Cell Reports · doi:10.1007/s00299-017-2210-4 · Cited by 121 · see citing works

Epigenetic responses to abiotic stresses during reproductive development in cereals

Begcy, K., & Dresselhaus, T. (2018) · Plant Reproduction · doi:10.1007/s00497-018-0343-4 · Cited by 120 · see citing works

Mechanisms Underlying the Environmentally Induced Plasticity of Leaf Morphology

Fritz, M. A., Rosa, S., & Sicard, A. (2018) · Frontiers in Genetics · doi:10.3389/fgene.2018.00478 · Cited by 119 · see citing works

An adaptive epigenetic memory in conifers with important implications for seed production

Yakovlev, I., Fossdal, C. G., Skrøppa, T., Olsen, J. E., Jahren, A. H., & Johnsen, Ø. (2012) · Seed Science Research · doi:10.1017/s0960258511000535 · Cited by 104 · see citing works

Transcriptional profiling of epigenetic regulators in somatic embryos during temperature induced formation of an epigenetic memory in Norway spruce

Yakovlev, I., Carneros, E., Lee, Y., Olsen, J. E., & Fossdal, C. G. (2016) · Planta · doi:10.1007/s00425-016-2484-8 · Cited by 103 · see citing works

Epigenetic memory and priming in plants

Kara, N. T., Arıkan, B., & Çelik, H. (2020) · Genetica · doi:10.1007/s10709-020-00093-4 · Cited by 104 · see citing works

An atlas of wheat epigenetic regulatory elements reveals subgenome divergence in the regulation of development and stress responses.

Wang, M., Li, Z., Zhang, Y., Zhang, Y.-Y., Xie, Y.-L., Ye, L., Zhuang, Y., Lin, K.-D., Zhao, F., Guo, J., et al. (2021) · The Plant Cell · doi:10.1093/plcell/koab028 · Cited by 82 · see citing works

A review on CRISPR/Cas-based epigenetic regulation in plants

Jogam, P., Sandhya, D., Alok, A., Peddaboina, V., Allini, V. R., & Zhang, B. (2022) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2022.08.182 · Cited by 105 · see citing works

Pre‐ mRNA splicing repression triggers abiotic stress signaling in plants

Ling, Y., Alshareef, S. A., Butt, H., Lozano‐Juste, J., Li, L., Galal, A. A., Moustafa, A., Momin, A. A., Tashkandi, M., Richardson, D. N., et al. (2016) · The Plant Journal · doi:10.1111/tpj.13383 · Cited by 99 · see citing works

Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes

Dwivedi, S. L., Scheben, A., Edwards, D., Spillane, C., & Ortiz, R. O. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.01461 · Cited by 109 · see citing works

Plant Stress Responses and Phenotypic Plasticity in the Epigenomics Era: Perspectives on the Grapevine Scenario, a Model for Perennial Crop Plants

Fortes, A. M., & Gallusci, P. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.00082 · Cited by 96 · see citing works

Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes

Springer, N. M., Lisch, D. R., & Li, Q. (2016) · The Plant Cell · doi:10.1105/tpc.15.00911 · Cited by 95 · see citing works

Multifaceted Chromatin Structure and Transcription Changes in Plant Stress Response

Kim, J. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22042013 · Cited by 94 · see citing works

Genetic and molecular mechanisms underlying mangrove adaptations to intertidal environments

Nizam, A., Meera, S. P., & Kumar, A. (2021) · iScience · doi:10.1016/j.isci.2021.103547 · Cited by 94 · see citing works

Cell wall integrity regulation across plant species

Baez, L. A., Tichá, T., & Hamann, T. (2022) · Plant Molecular Biology · doi:10.1007/s11103-022-01284-7 · Cited by 93 · see citing works

Alternative Splicing Dynamics in Plant Adaptive Responses to Stress

Alhabsi, A., Ling, Y., Crespi, M. D., Reddy, A. S. N., & Mahfouz, M. M. (2025) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-083123-090055 · Cited by 97 · see citing works

Role of DNA methylation in hybrid vigor in Arabidopsis thaliana

Kawanabe, T., Ishikura, S., Miyaji, N., Sasaki, T., Wu, L., Itabashi, E., Takada, S., Shimizu, M., Takasaki-Yasuda, T., Osabe, K., et al. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1613372113 · Cited by 91 · see citing works

The causes and molecular consequences of polyploidy in flowering plants

Moghe, G. D., & Shiu, S. (2014) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.12466 · Cited by 89 · see citing works

Plant stress biology in epigenomic era

Perrone, A. F., & Martinelli, F. (2019) · Plant Science · doi:10.1016/j.plantsci.2019.110376 · Cited by 88 · see citing works

A Structural Perspective on Readout of Epigenetic Histone and DNA Methylation MarksPreprint

Patel, D. J. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018754 · Cited by 87 · see citing works

Histone deacetylases control lysine acetylation of ribosomal proteins in rice

Xu, Q., Liu, Q., Chen, Z., Yue, Y., Liu, Y., Zhao, Y. J., & Zhou, D. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab244 · Cited by 87 · see citing works

Epigenetic regulation of rice flowering and reproduction

Shi, J., Dong, A., & Shen, W. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2014.00803 · Cited by 87 · see citing works

Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns

Gutzat, R., Rembart, K., Nußbaumer, T., Pisupati, R., Hofmann, F., Bradamante, G., Daubel, N., Gaidora, A., Lettner, N., Donà, M., et al. (2020) · The EMBO Journal · doi:10.15252/embj.2019103667 · Cited by 83 · see citing works

Temperature-dependent differential transcriptomes during formation of an epigenetic memory in Norway spruce embryogenesis

Yakovlev, I., Lee, Y., Rotter, B., Olsen, J. E., Skrøppa, T., Johnsen, Ø., & Fossdal, C. G. (2014) · Tree Genetics & Genomes · doi:10.1007/s11295-013-0691-z · Cited by 82 · see citing works

ROS1-Dependent DNA Demethylation Is Required for ABA-Inducible NIC3 Expression

Kim, J., Lim, J. Y., Shin, H., Kim, B., Yoo, S.-D., Kim, W. T., & Huh, J. H. (2019) · PLANT PHYSIOLOGY · doi:10.1104/pp.18.01471 · Cited by 78 · see citing works

Epigenomics of plant responses to environmental stress

Kumar, S. (2018) · Epigenomes · doi:10.3390/epigenomes2010006 · Cited by 73 · see citing works

Genetic Variation and Unintended Risk in the Context of Old and New Breeding Techniques

Singer, S. D., Laurie, J. D., Bilichak, A., Kumar, S., & Singh, J. (2021) · Critical Reviews in Plant Sciences · doi:10.1080/07352689.2021.1883826 · Cited by 77 · see citing works

Chromatin Remodeling and Epigenetic Regulation in Plant DNA Damage Repair

Kim, J. (2019) · International Journal of Molecular Sciences · doi:10.3390/ijms20174093 · Cited by 77 · see citing works

The Dynamic Genetic-Hormonal Regulatory Network Controlling the Trichome Development in Leaves

Fambrini, M., & Pugliesi, C. (2019) · Plants · doi:10.3390/plants8080253 · Cited by 76 · see citing works

Histone deacetylation-mediated cellular dedifferentiation in Arabidopsis

Lee, K., Park, O., Jung, S., & Seo, P. J. (2015) · Journal of Plant Physiology · doi:10.1016/j.jplph.2015.12.006 · Cited by 74 · see citing works

Genome‐wide DNA hypomethylation shapes nematode pattern‐triggered immunity in plants

Atighi, M. R., Verstraeten, B., Meyer, T. D., & Kyndt, T. (2020) · New Phytologist · doi:10.1111/nph.16532 · Cited by 74 · see citing works

DNA methylation underpins the epigenomic landscape regulating genome transcription in Arabidopsis

Zhao, L., Zhou, Q., He, L. S., Deng, L., Lozano‐Durán, R., Li, G., & Zhu, J. (2022) · Genome biology · doi:10.1186/s13059-022-02768-x · Cited by 74 · see citing works

Manipulation of the Plant Host by the Geminivirus AC2/C2 Protein, a Central Player in the Infection Cycle

Guerrero, J., Regedanz, E., Liu, L., Ruan, J., Bisaro, D. M., & Sunter, G. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.00591 · Cited by 73 · see citing works

Developmental transitions: integrating environmental cues with hormonal signaling in the chromatin landscape in plants

Xiao, J. Y., Jin, R., & Wagner, D. (2017) · Genome biology · doi:10.1186/s13059-017-1228-9 · Cited by 74 · see citing works

Global DNA Methylation Patterns Can Play a Role in Defining Terroir in Grapevine (Vitis vinifera cv. Shiraz)

Xie, H., Konaté, M., Sai, N., Tesfamicael, K., Cavagnaro, T. R., Gilliham, M., Breen, J., Metcalfe, A. V., Stephen, J. R., Bei, R. D., et al. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.01860 · Cited by 73 · see citing works

The Use of Mouse Models to Study EpigeneticsPreprint

Blewitt, M., & Whitelaw, E. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a017939 · Cited by 73 · see citing works

Rosaceae Fruit Development, Ripening and Post-harvest: An Epigenetic Perspective

Farinati, S., Rasori, A., Varotto, S., & Bonghi, C. (2017) · Frontiers in Plant Science · doi:10.3389/fpls.2017.01247 · Cited by 72 · see citing works

Molecular genetic analyses of abiotic stress responses during plant reproductive development

Ma, X., Su, Z. Z., & Mā, H. (2020) · Journal of Experimental Botany · doi:10.1093/jxb/eraa089 · Cited by 71 · see citing works

Unravelling the Epigenetic Code: DNA Methylation in Plants and Its Role in Stress Response

Talarico, E., Zambelli, A., Araniti, F., Greco, E., Chiappetta, A. A. C., & Bruno, L. (2024) · Epigenomes · doi:10.3390/epigenomes8030030 · Cited by 67 · see citing works

Uncovering the Epigenetic Marks Involved in Mediating Salt Stress Tolerance in Plants

Singroha, G., Kumar, S., Gupta, O. P., Singh, G. P., & Sharma, P. K. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.811732 · Cited by 66 · see citing works

Establishment and evolution of heterochromatin

Liu, J., Ali, M., & Zhou, Q. (2020) · Annals of the New York Academy of Sciences · doi:10.1111/nyas.14303 · Cited by 65 · see citing works

The epigenetic memory of temperature during embryogenesis modifies the expression of bud burst-related genes in Norway spruce epitypes

Carneros, E., Yakovlev, I., Viejo, M. D., Olsen, J. E., & Fossdal, C. G. (2017) · Planta · doi:10.1007/s00425-017-2713-9 · Cited by 64 · see citing works

Seed germination in parasitic plants: what insights can we expect from strigolactone research?

Brun, G., Braem, L., Thoiron, S., Gevaert, K., Goormachtig, S., & Delavault, P. M. (2017) · Journal of Experimental Botany · doi:10.1093/jxb/erx472 · Cited by 64 · see citing works

Accessing the Inaccessible: The Organization, Transcription, Replication, and Repair of Heterochromatin in Plants

Feng, W., & Michaels, S. D. (2015) · Annual Review of Genetics · doi:10.1146/annurev-genet-112414-055048 · Cited by 59 · see citing works

Regulation of Cell Wall Thickening by a Medley of Mechanisms

McCahill, I. W., & Hazen, S. P. (2019) · Trends in Plant Science · doi:10.1016/j.tplants.2019.05.012 · Cited by 63 · see citing works

In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce

Yakovlev, I., & Fossdal, C. G. (2017) · Frontiers in Physiology · doi:10.3389/fphys.2017.00674 · Cited by 62 · see citing works

The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

Ghan, R., Petereit, J., Tillett, R. L., Schlauch, K. A., Toubiana, D., Fait, A., & Cramer, G. R. (2017) · BMC Plant Biology · doi:10.1186/s12870-017-1043-1 · Cited by 62 · see citing works

Rapid Epigenetic Adaptation in Animals and Its Role in Invasiveness

Carneiro, V. C., & Lyko, F. (2020) · Integrative and Comparative Biology · doi:10.1093/icb/icaa023 · Cited by 62 · see citing works

UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis

Jiang, J., Liu, J., Sanders, D., Qian, S., Ren, W., Song, J., Liu, F., & Zhong, X. (2021) · Nature Plants · doi:10.1038/s41477-020-00843-4 · Cited by 58 · see citing works

Differentially methylated obligatory epialleles modulate context-dependentLAMgene expression in the honeybeeApis mellifera

Wedd, L., Kucharski, R., & Maleszka, R. (2015) · Epigenetics · doi:10.1080/15592294.2015.1107695 · Cited by 57 · see citing works

Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

Oztas, O., Selby, C. P., Sancar, A., & Adebalı, O. (2018) · Nature Communications · doi:10.1038/s41467-018-03922-5 · Cited by 57 · see citing works

Redox Components: Key Regulators of Epigenetic Modifications in Plants

M., S. K. R., Wang, Y., Zhang, X., Cheng, H. S., Sun, L., He, S., & Hao, F. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21041419 · Cited by 56 · see citing works

Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes

Gao, D., Li, Y., Kim, K. D., Abernathy, B. L., & Jackson, S. A. (2016) · Genome biology · doi:10.1186/s13059-015-0867-y · Cited by 56 · see citing works

Epigenetic regulation – contribution to herbicide resistance in weeds?

Markus, C., Pečinka, A., Karan, R., Barney, J. N., & Merotto, A. (2017) · Pest Management Science · doi:10.1002/ps.4727 · Cited by 55 · see citing works

OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress

Song, T., Zhang, Q., Wang, H., Han, J., Xu, Z., Yan, S., & Zhu, Z. (2018) · Plant Physiology and Biochemistry · doi:10.1016/j.plaphy.2018.09.007 · Cited by 55 · see citing works

Mechanical stress acclimation in plants: Linking hormones and somatic memory to thigmomorphogenesis

Brenya, E., Pervin, M., Chen, Z., Tissue, D. T., Johnson, S. N., Braam, J., & Cazzonelli, C. I. (2022) · Plant Cell & Environment · doi:10.1111/pce.14252 · Cited by 54 · see citing works

Redox-Dependent Chromatin Remodeling: A New Function of Nitric Oxide as Architect of Chromatin Structure in Plants

Ageeva-Kieferle, A., Rudolf, E. E., & Lindermayr, C. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.00625 · Cited by 53 · see citing works

Conditional GWAS of non-CG transposon methylation in Arabidopsis thaliana reveals major polymorphisms in five genes

Sasaki, E., Gunis, J., Reichardt, I., Nizhynska, V., & Nordborg, M. (2022) · PLoS Genetics · doi:10.1371/journal.pgen.1010345 · Cited by 46 · see citing works

Stress response regulation by epigenetic mechanisms: changing of the guards

Annacondia, M. L., Magerøy, M. H., & Martínez, G. (2017) · Physiologia Plantarum · doi:10.1111/ppl.12662 · Cited by 52 · see citing works

Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

Agius, D., Kapazoglou, A., Avramidou, E. V., Baránek, M., Carneros, E., Caro, E., Castiglione, S., Cicatelli, A., Radanović, A., Ebejer, J.-P., et al. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1181039 · Cited by 55 · see citing works

Phenotypic Analysis of Seed Yield and Yield Components in Cowpea ( Vigna unguiculata L., Walp)

Aliyu, O. M., & Makinde, B. O. (2016) · Plant Breeding and Biotechnology · doi:10.9787/pbb.2016.4.2.252 · Cited by 51 · see citing works

Role of Epigenetics in Modulating Phenotypic Plasticity against Abiotic Stresses in Plants

Dar, F. A., Mushtaq, N. U., Saleem, S., Rehman, R. U., Dar, T. U. H., & Hakeem, K. R. (2022) · International Journal of Genomics · doi:10.1155/2022/1092894 · Cited by 50 · see citing works

Diversity in cowpea (Vigna unguiculata (L.) Walp.) local populations from Greece

Lazaridi, E., Ntatsi, G., Savvas, D., & Bebeli, P. J. (2016) · Genetic Resources and Crop Evolution · doi:10.1007/s10722-016-0452-6 · Cited by 48 · see citing works

Massive Loss of DNA Methylation in Nitrogen-, but Not in Phosphorus-Deficient Zea mays Roots Is Poorly Correlated With Gene Expression Differences

Mager, S., & Ludewig, U. (2018) · Frontiers in Plant Science · doi:10.3389/fpls.2018.00497 · Cited by 48 · see citing works

CIN‐TCP transcription factors: Transiting cell proliferation in plants

Sarvepalli, K. R., & Nath, U. (2018) · IUBMB Life · doi:10.1002/iub.1874 · Cited by 48 · see citing works

Shaping Plant Adaptability, Genome Structure and Gene Expression through Transposable Element Epigenetic Control: Focus on Methylation

Galindo‐González, L., Sarmiento, F., & Quimbaya, M. (2018) · Agronomy · doi:10.3390/agronomy8090180 · Cited by 48 · see citing works

Analysis of Whole Transcriptome RNA-seq Data Reveals Many Alternative Splicing Events in Soybean Roots under Drought Stress Conditions

Li, S., Pan, Z., Chen, L., Dai, Y., Wan, J., Ye, H., Nguyen, H. T., Zhang, G., & Chen, H. (2020) · Genes · doi:10.3390/genes11121520 · Cited by 48 · see citing works

OVERVIEW

Pikaard, C. S., Scheid, O. M., Allis, C. D., Caparros, M.-L., Jenuwein, T., Reinberg, D., Cold, C., Harb, S., & Biol, P. (2016)

Epigenetic developmental mechanisms in plants: molecules and targets of plant epigenetic regulation

Habu, Y., Kakutani, T., & Paszkowski, J. (2001) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(00)00182-9 · Cited by 71 · see citing works

Epigenetic Control in Plants

Brukhin, V. B. (2020) · Epigenomes · doi:10.3390/epigenomes4030011

Epigenetics and its Implications for Plant Biology. 1. The Epigenetic Network in Plants

Grant‐Downton, R., & Dickinson, H. G. (2005) · Annals of Botany · doi:10.1093/aob/mci273 · Cited by 183 · see citing works

Case Studies on Epigenetic Regulation in Model Plant Species

Ibrahim, M. A., Sattar, M. M., Bashir, R., & Kaleem, M. (2025) · IGI Global eBooks · doi:10.4018/979-8-3693-8648-4.ch015