The DOI matches its Crossref record; 39 of the 39 references it cites were found in a registry or an index.
Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome
Open accessAbstract
The Escherichia coli RNA degradosome is the prototype of a recently discovered family of multiprotein machines involved in the processing and degradation of RNA. The interactions between the various protein components of the RNA degradosome were investigated by Far Western blotting, the yeast two-hybrid assay, and coimmunopurification experiments. Our results demonstrate that the carboxy-terminal half (CTH) of ribonuclease E (RNase E) contains the binding sites for the three other major degradosomal components, the DEAD-box RNA helicase RhlB, enolase, and polynucleotide phosphorylase (PNPase). The CTH of RNase E acts as the scaffold of the complex upon which the other degradosomal components are assembled. Regions for oligomerization were detected in the amino-terminal and central regions of RNase E. Furthermore, polypeptides derived from the highly charged region of RNase E, containing the RhlB binding site, stimulate RhlB activity at least 15-fold, saturating at one polypeptide per RhlB molecule. A model for the regulation of the RhlB RNA helicase activity is presented. The description of RNase E now emerging is that of a remarkably complex multidomain protein containing an amino-terminal catalytic domain, a central RNA-binding domain, and carboxy-terminal binding sites for the other major components of the RNA degradosome.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Improved method for high efficiency transformation of intact yeast cells
Gietz, D., Jean, A. S., Woods, R. A., & Schiestl, R. H. (1992) · Nucleic Acids Research · doi:10.1093/nar/20.6.1425 · Cited by 3,261
Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2
Gyuris, J. (1993) · Cell · doi:10.1016/0092-8674(93)90498-f · Cited by 1,522
The Cell as a Collection of Protein Machines: Preparing the Next Generation of Molecular Biologists
Alberts, B. (1998) · Cell · doi:10.1016/s0092-8674(00)80922-8 · Cited by 1,411
Mitchell, P., Petfalski, E., Shevchenko, A., Mann, M., & Tollervey, D. (1997) · Cell · doi:10.1016/s0092-8674(00)80432-8 · Cited by 954
Anderson, J. S. J. (1998) · The EMBO Journal · doi:10.1093/emboj/17.5.1497 · Cited by 650
Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F.
Rozen, F., Edery, I., Meerovitch, K., Dever, T. E., Merrick, W. C., & Sonenberg, N. (1990) · Molecular and Cellular Biology · doi:10.1128/mcb.10.3.1134 · Cited by 631
Effective amplification of long targets from cloned inserts and human genomic DNA.
Cheng, S., Fockler, C., Barnes, W. M., & Higuchi, R. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.12.5695 · Cited by 626
Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A.
Pause, A., & Sonenberg, N. (1992) · The EMBO Journal · doi:10.1002/j.1460-2075.1992.tb05330.x · Cited by 614
A simple method for site-directed mutagenesis using the polymerase chain reaction
Hemsley, A., Arnheim, N., Toney, M. D., Cortopassi, G., & Galas, D. J. (1989) · Nucleic Acids Research · doi:10.1093/nar/17.16.6545 · Cited by 612
A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
Py, B., Higgins, C. F., Krisch, H. M., & Carpousis, A. J. (1996) · Nature · doi:10.1038/381169a0 · Cited by 553
Self-citation
Cited by
The yeast exosome and human PM-Scl are related complexes of 3' right-arrow 5' exonucleases
Allmang, C., Petfalski, E., Podtelejnikov, A., Mann, M., Tollervey, D., & Mitchell, P. (1999) · Genes & Development · doi:10.1101/gad.13.16.2148 · Cited by 448
The RNA Degradosome of Escherichia coli: An mRNA-Degrading Machine Assembled on RNase E
Carpousis, A. J. (2007) · Annual Review of Microbiology · doi:10.1146/annurev.micro.61.080706.093440 · Cited by 445
Self-citationThe critical role of RNA processing and degradation in the control of gene expression
Arraiano, C. M., Andrade, J. M., Domingues, S., Guinote, I. B., Malecki, M., Matos, R. G., Moreira, R. N., Pobre, V., Reis, F. P., Saramago, M., et al. (2010) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2010.00242.x · Cited by 349
The structure and function of the gram-positive bacterial RNA degradosome
Cho, K. H. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00154 · Cited by 48
Structural Insights into the Dimeric Form of Bacillus subtilis RNase Y Using NMR and AlphaFold
Morellet, N., Hardouin, P., Assrir, N., van Heijenoort, C., & Golinelli-Pimpaneau, B. (2022) · Biomolecules · doi:10.3390/biom12121798 · Cited by 7
Metadata
- Authors
- Vanzo, N. F., Li, Y. S., Py, B., Blum, E., Higgins, C. F., Raynal, L. C., Krisch, H. M., & Carpousis, A. J.
- Venue
- Genes & Development
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 1998-09-01
- Volume
- 12
- Issue
- 17
- Pages
- 2770-2781
- ISSN
- 0890-9369 (ISSN-L)
- 1549-5477
- OpenAlex
- W2125150600
- Cited by
- 299
- References
- 39
- Type
- posted content
- Language
- en
- Open access
- diamond
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. https://app.cochat.ai/papers/10.1101/gad.12.17.2770
- The paper
- Vanzo, N. F., Li, Y. S., Py, B., Blum, E., Higgins, C. F., Raynal, L. C., Krisch, H. M., & Carpousis, A. J. (1998). Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. Genes & Development. https://doi.org/10.1101/gad.12.17.2770
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.